FastQCFastQC Report
Tue 10 May 2022
EGAF00003629811

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003629811
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1681520
Sequences flagged as poor quality0
Sequence length100
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTTATACCAGCGTTATGAGATCAAGATGACCAAGATGTATAAAGGGTTC49270.29300870640848753No Hit
GGGTGGACACTGTGCAGGCTTCAGCTTCCACTCCGGGCAGGATTCAGGCT42220.2510823540606118No Hit
GTTTTATTATCATTCACATTATTTCATAGAAAAAGGAATATAGCAAACGG35980.21397307198249205No Hit
GTATAAAGGGTTCCAAGCCTTAGGGGATGCCGCTGACATCCGGTTCGTCT31490.18727104048717827No Hit
GTGCAGGCTTCAGCTTCCACTCCGGGCAGGATTCAGGCTATCTGGGACCG26870.15979589894857035No Hit
GCCCTGGCTCCCGAGGCAGGCAGGCAAGGTGACGGGACTGGAAGCCCTTT26530.15777391883533945No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT24090.14326323802274132No Hit
GTCCCAGCATCAGGCGCAGCAGCTGCACTTGTCCGACGCCCCTTTGCAGA23990.14266853798943813No Hit
ATCTGGGACCGCAGGGACTGCCAGGTGCACAGCCCTGGCTCCCGAGGCAG22690.1349374375564965No Hit
GGTCAGGGTTGTACATAAAAAATCCAGGTTTGTGGAAGTCGCGTTCTTTA22510.13386697749655074No Hit
GTACATGGGACCACGCCTCCTCCAAGTCCCAGCGAACCCGCGTGCAACCT22410.13327227746324752No Hit
CTCCTGCACCTGCGCCGGCTCCTGCAAATGCAAAGAGTGCAAATGCACCT22030.13101241733669539No Hit
CTTTACATCTGGGAGCGGGGCTGTCCCAGCATCAGGCGCAGCAGCTGCAC20870.12411389695037824No Hit
GGGTTGTACATAAAAAATCCAGGTTTGTGGAAGTCGCGTTCTTTACATCT18500.11001950616109234No Hit
CTCCAAGTCCCAGCGAACCCGCGTGCAACCTGTCCCGACTCTAGCCGCCT18410.10948427613111945No Hit
GTGTAGGTCTTGGTGAAGCCCCGGCGCTGAGCTAAGCTCAGGCTGTTCCA18130.10781911603787049No Hit
GCCTTAGGGGATGCCGCTGACATCCGGTTCGTCTACACCCCCGCCATGGA17470.10389409581806935No Hit
TAGCCACACAGTGCAAAATTGCCAGGGCTTCTGCCAGGTTCAGCAGCAGG17000.10109900566154432No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)