FastQCFastQC Report
Tue 10 May 2022
EGAF00003629812

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003629812
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1681520
Sequences flagged as poor quality0
Sequence length100
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTTATACCAGCGTTATGAGATCAAGATGACCAAGATGTATAAAGGGTTC51410.3057352871211761No Hit
GGGTGGACACTGTGCAGGCTTCAGCTTCCACTCCGGGCAGGATTCAGGCT38480.22884057281507206No Hit
GTATAAAGGGTTCCAAGCCTTAGGGGATGCCGCTGACATCCGGTTCGTCT37080.22051477234882724No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG36820.2189685522622389No Hit
GTTTTATTATCATTCACATTATTTCATAGAAAAAGGAATATAGCAAACGG34020.20231695132974925No Hit
ATCTGGGACCGCAGGGACTGCCAGGTGCACAGCCCTGGCTCCCGAGGCAG24930.1482587183024882No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT24570.1461177981825967No Hit
GTACATGGGACCACGCCTCCTCCAAGTCCCAGCGAACCCGCGTGCAACCT24440.14534468813930254No Hit
GTGCAGGCTTCAGCTTCCACTCCGGGCAGGATTCAGGCTATCTGGGACCG24340.14474998810599932No Hit
GCCCTGGCTCCCGAGGCAGGCAGGCAAGGTGACGGGACTGGAAGCCCTTT23700.14094390789285885No Hit
GGTCAGGGTTGTACATAAAAAATCCAGGTTTGTGGAAGTCGCGTTCTTTA23390.13910033778961892No Hit
CTCCTGCACCTGCGCCGGCTCCTGCAAATGCAAAGAGTGCAAATGCACCT22990.13672153765640613No Hit
GGGTTGTACATAAAAAATCCAGGTTTGTGGAAGTCGCGTTCTTTACATCT21230.12625481707026975No Hit
GTCCCAGCATCAGGCGCAGCAGCTGCACTTGTCCGACGCCCCTTTGCAGA20090.11947523669061325No Hit
CTTTACATCTGGGAGCGGGGCTGTCCCAGCATCAGGCGCAGCAGCTGCAC18970.1128145963176174No Hit
GCCTTAGGGGATGCCGCTGACATCCGGTTCGTCTACACCCCCGCCATGGA17320.10300204576811456No Hit
TAGCCACACAGTGCAAAATTGCCAGGGCTTCTGCCAGGTTCAGCAGCAGG17000.10109900566154432No Hit
CATTATTTCATAGAAAAAGGAATATAGCAAACGGTCACGGTCAGGGTTGT16940.10074218564156241No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)