FastQCFastQC Report
Wed 31 Aug 2022
EGAF00003629863

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003629863
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19
Sequences flagged as poor quality0
Sequence length100
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTCAGGAGCATCTAGTAGCCACTCCCTGGCTCGCCTCTCCTCCTCCACC210.526315789473683No Hit
CACCCAAACCGATGCCAAATCCAAACCCCAACCACCCTAGTTCCTCCGGT210.526315789473683No Hit
ACCTAGTACTGGGATTGCTGGATCCTATATAGTCACTCTATTTTTAGATT15.263157894736842No Hit
GCGTGAACGCCCGTTCTACGGCCGCCTTGTCAAGTATATGGCCTCCGGGC15.263157894736842No Hit
TAACAATACAGGACTCTTTCGAGGCCCTGTAATTGGAATGAGTCCACTTT15.263157894736842No Hit
CCGCCAATATGCACTGTACATTCCACAAGCATTGCCTTCTTATTTTACTT15.263157894736842No Hit
AGATGGAAGGCATTTACGCTGACATCCCTGTGCGGCGTCCGGAGTCCAGT15.263157894736842No Hit
GCTGCAGGTTGTTCTGGAAGTTGAGGAAGGCCAGGTCTCCCTTCACCTGG15.263157894736842No Hit
GGAGTAGATTAGGCGTAGGTAGAAGTAGAGGTTAAGGAGGGTGATGGTGG15.263157894736842No Hit
CTTGTACTACACTGAATTCACCCCCACTGAAAAAGATGAGTATGCCTGCC15.263157894736842No Hit
TCTCCTATCTCTCCCAGTCCTAGCTGCTGGCATCACTATACTACTAACAG15.263157894736842No Hit
ACCTTGAGGGCAGCAGGAACCACCATCCGCTTTTTCTTGTCGTAGGGCGG15.263157894736842No Hit
AAGCAGGCCCGAGCCGCCTGGATACCGCAGCTAGGAATAATGGAATAGGA15.263157894736842No Hit
GGCCTTAGCTGTGCTCGCGCTACTCTCTCTTTCTGGCCTGGAGGCTATCC15.263157894736842No Hit
GTGATAATCCACCAGCTCATTCAAGAAATTGAACTTCACCACCCAGAGGA15.263157894736842No Hit
GTCTATAATTAACTGACAGACCTAACTGAAGCACAGAGAATACATCAGAC15.263157894736842No Hit
GTCCTACACTATCTTGGATATGATATGGCGCACTACACATGCTAGCCGCT15.263157894736842No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)