FastQCFastQC Report
Wed 31 Aug 2022
EGAF00003629864

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003629864
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19
Sequences flagged as poor quality0
Sequence length100
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTGGCTCTCCATGTCCACCTCCCCTTGTTCATTTTCTTTGAAGCATAGC210.526315789473683No Hit
GTTGTGGAGGGGCGGGCCGGACGCTGAGCGGAGCAGCTGCGCCACGGGTG15.263157894736842No Hit
ACGCCGACCGCTCGGGGGTCGCGTAACTAGTTAGCATGCCCGAGTCTCGT15.263157894736842No Hit
GTACGATGTCTAGTGATGAGTTTGCTAATACAATGCCAGTCAGGCCACCT15.263157894736842No Hit
AGAGAATTCTCTGCTCCCCACCTCTAAGTTGCCAGCCCTCCTAGAGCTAC15.263157894736842No Hit
CCCTTAATTCCATCCACCCTCCTCTCCCTAGGAGGCCTGCCCCCGCTAAC15.263157894736842No Hit
CAATACGAATGCCCCCGGCCGTCCCTCTTAATCATGGCCTCAGTTCCGAA15.263157894736842No Hit
GATGAACACCAACCCTTCCCGAGGCCCCTACCACTTCCGGGCCCCCAGCC15.263157894736842No Hit
AGATTTCACTGTCGTCCCACCCCACTTCTTCCACCCCACTTCTTCCTTCA15.263157894736842No Hit
GTCCAAAGGGATGCTCCAAGCGCTGTGGGGTGGGGCCAGAAGCCCGCCCA15.263157894736842No Hit
GTTTTATGAAGCAAAGCTAACCTCATTACAACATCTAAGCTATTTGAGAA15.263157894736842No Hit
CTACTACGTGCGCGATATGACAAGTTAACAAGACGGCGCAGGTTGATGCT15.263157894736842No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGTGT15.263157894736842No Hit
GCCAAATGATTGTGTGATTCAGATACAAAGGTTTTTTAAGAAGTTCGTGC15.263157894736842No Hit
CTCCTGGGGGCGCGCGTCCGCGCCATTTTCAAGGCGGCCGAGCGCCCCCA15.263157894736842No Hit
GAGCAGAACAAGCGGCCCTGCAGGAAGTTTCTACTGACAGGCCAGTGCGA15.263157894736842No Hit
GAGCAGAACAAGCGGCCCTGCAGGACGTTTCTACTGACAGGCCAGTGCGA15.263157894736842No Hit
ACTTAACTATCTTGGGCTGTGACAAAGTCACATGGTTCACATGGCAGGCA15.263157894736842No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)