FastQCFastQC Report
Fri 10 May 2024
EGAF00003630020

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003630020
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences125
Total Bases12.5 kbp
Sequences flagged as poor quality0
Sequence length100
%GC51

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG64.8No Hit
GCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGT32.4Clontech Universal Primer Mix Long (96% over 26bp)
TAACTAGTTAGCATGCCAGAGTCTCGTTCGTTATCGGAATTAACCAGACA32.4No Hit
GCATATAGTAGGTGCTCAATAAAGACCAACCAGATGCAGGAGTGGATGAC21.6No Hit
CTAGGGGGTCTATCAACTCCATCAGAGTCCCTGGAACACAGTGAACCTCT21.6No Hit
CACACTGGCACGTCGGCATCACGCAAAAGGAGACTGCATGGGCGGTCGTA21.6No Hit
GTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATACCAC21.6Clontech Universal Primer Mix Long (96% over 26bp)
AGCCAAGGAGCACCAAGGACCTCTGGCAACCACCAGAAGCTGGGAGAGAA21.6No Hit
GGATTACCATGGCAACAACACATCATCAGTAGGGTAAAACTAACCTGTCT10.8No Hit
GTCCAGCAGCTTGCGGAACATTTCCACGCCGGTGCAGGTGGTCTTGACCG10.8No Hit
GGATTACCATGGCAACAACACAGCATCAGGAGGGTAAAACTAACCTGTCT10.8No Hit
CTCTAATTCCACATGTCTCCGCTGCCTGGTGGGTCCTGTGAGGGCGGCGG10.8No Hit
GGTGGGAAGAGGGCCATCTGCCTGAATGTAACCTGCTAGCTCTCAGATGG10.8No Hit
GGGCACACCCGGCCCTGCAGGCCTGCAGCGCACCCCACACACACACTGAT10.8No Hit
TTGCTGGTGATGCTGGATGTATATAATGCAAGGGACAAGCAGAAGAACAG10.8No Hit
GGGCATGGTGGCAGGTGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCA10.8No Hit
GTCCTAGGTCCTGTGCCGCTGACCCGTACCTCTCGGACCCGGACACTACG10.8No Hit
GGGTGGTGGGGGGGGGGGGGGGTGGGGTGGGGGGGGGTGTTGGGGGGGGG10.8No Hit
GTAATAGATACTCAACATACAATCAACCCAACCATTAGCATTCTCAGTGT10.8No Hit
GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATG10.8Clontech SMARTer II A Oligonucleotide (100% over 25bp)
AAAGTGGCTAAGGAAAAAATAAAAAATCTAATCTATGTGGAAAAGCGAAT10.8No Hit
ATCCGATGATGATTCCATTCGATTCCGTTCAATGATTATGCCATTCGAGT10.8No Hit
GGCCACACCCGGCCCTGCAGGCCGGCAGCGCACCCCACACACACACTGAT10.8No Hit
CATTTTATCACATGATTAGTTTAAATATTATTTTACTACTGTGCTTTTTC10.8No Hit
GTCTAGTTTAAAAAAAAAAGGAAAGACAGAGACAGTATTGTCTTAACCTA10.8No Hit
CTCTGGAGCTGAAAAATTCAATTGACATGCTGAAGAATACATCAGAGTCT10.8No Hit
CATGGGAAGCAGTGGTATCCACGCAGAGTACATGGGAAGCAGTGGTATCA10.8Clontech SMARTer II A Oligonucleotide (96% over 25bp)
GGACACAGGACTGGTAAATTTTGACATGGAAATGGAGATGAGGAAAAACC10.8No Hit
GTGGCTCACACCTGTAATCCCAGCAGTTTAGAGGCCAAGGTAGGAGGATT10.8No Hit
CTTCCACCTTCCCCCTTTAATGCTATGAAGACAGAAAAATACATAAAAAT10.8No Hit
GTCAGACTTTGTGTTCATTTCATTTCAGGGTCTTGGCTGCCTGTGGGATT10.8No Hit
GGGGGGGGGGGGGGTGGGGGGGGTGGGTGTGGGGGGGGGGGGGGGGGGGG10.8No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA10.8Clontech SMARTer II A Oligonucleotide (100% over 25bp)
GTTTTTGCCATGCTGCCCAGGCTGGTCTCAAACTCCTGGCCTCAAATGAT10.8No Hit
CACTCCAGCCTGTTCATTTTCTTAATGGTGTCTTTTGATGGGCAGAAAAC10.8No Hit
GTGGGAGGACCGGTTGGTGGCACCCTGCTCGGCCCGCAGCCCTGCCGCGG10.8No Hit
ACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTTGTGTGACCGCGGTGG10.8No Hit
GACCACTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTAC10.8Clontech Universal Primer Mix Long (96% over 26bp)
CTTTCAAGTCCTTGAGGCCCACAGCCTGGTGTGTTTCACGCACAGATAAG10.8No Hit
CTACTGCATTCCAGCCTGAGTGACAGAGTGAAACCCTGTCTCTAAATAAA10.8No Hit
GGGGGCCGCTGTGTCAACACTGTGGGCTCTTATCACTGTACCTGCGCGCC10.8No Hit
CAGCTGCTTCCACCTACCTCAACAACCCGTACGTGCGGAAGGCCCTCAAC10.8No Hit
GCACAGAAGACAACAACCAGATTCATTCTGTACCTGTGTGATTTTCAACA10.8No Hit
GTTCTGTTCCATTGTTCTACATTTCTGTTTTGGTACCAGTACCATGCTGG10.8No Hit
TACCACTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTAC10.8Clontech Universal Primer Mix Long (96% over 26bp)
GGTATCAACACAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACTT10.8Clontech SMART CDS Primer II A (100% over 26bp)
TCGCTGTCTAGGCCGGAGCAAAGGCCGGAGGTATCCAGATATGGACACTG10.8No Hit
GGGCGCCTCGCAGAGTCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGG10.8No Hit
ATAGAAGCGTTTCACCATTTAGAAATGCAGAGGTATCCATGACAACATTA10.8No Hit
GCTGTAGTTTATTCTCAAGCTCTGTCTTCTGTAAAACAGCAATTTTAAGC10.8No Hit
CCACGCAGAGTACATGGGAAGCAGTGGTATCAAAAAAAAAAAAAAAATAA10.8No Hit
CGTGGAAGCAGTGGTATCAACGCAGAGTACATGGGCAGCAGTGGTATCAA10.8Clontech SMARTer II A Oligonucleotide (100% over 25bp)
GGTGGGCAGGGCGATGATGTCGGTGCCCACGGAGTGCAGGCCGCCGCCGC10.8No Hit
GGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGC10.8Clontech SMARTer II A Oligonucleotide (100% over 25bp)
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGCGGGGGGTGTGGGG10.8No Hit
GGGGGGGGGTGGTCCTCGTCGGCCCCTGTGCGGGTCATGTCCCGGTGGCC10.8No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA10.8No Hit
TTGCCACCCCAGTGACGGCGGATCTCATCGTATCTGTCATTGTAATTGGT10.8No Hit
CACTCCAGCCTGTTCATTTTCTTAATGGTGTCTTTTTATGGGCAGAACAC10.8No Hit
AGCTTCGCCCCATTGGCTCCTCAGCCCCGCACATACAACAATTGTCTGCA10.8No Hit
GAGGGAGTGGTATCCAGCCCAGATACTACACTTTTCCCAGTTTTTGCAAC10.8No Hit
GTGTCTGATTTGACACCTTATCAAGGTAAATCAAGACATGGTTGCTGCTG10.8No Hit
GTCTAGTTTAAAAAAAAAAGGAAAGACAGAGTCAGTATTGTCTTAACCTA10.8No Hit
GCCGGTTGTTGGTCATCGTCGGCCCCTGTTCGGTTCATGACCCGAAGGCC10.8No Hit
AGTTTGGCTTCATGAGAAATTGCCAAACCGTCTTCCAAAGAGGTTGCACC10.8No Hit
GCGCTCTTCCTTCCTTCCTCTTTCCCTCCCTCCCTCCCTTCCTTTCTTTC10.8No Hit
GTCTTTGGGTTCCGGGGGGAGTATGGTTGCAAAGCTGAAACTTAAAGGAC10.8No Hit
GGGGGGGGGGGGGCGGGGGGCGGGGAGGGGCGGGGCCGCGGGTGGGGGGG10.8No Hit
GGGGGGGGGTCGGGGGGGTATGGCGCGGCCAGTCTGCTGGTCCGTGTAAG10.8No Hit
GGCATATAGTTCTTTTTCACCTTGTAGATGGGGCTTTATCAGATCTTTGA10.8No Hit
GTGGCAGTATAGTAATTCAACAGTTTCTTCTCTTGAAGACATGTAAAAAG10.8No Hit
CTTATGAGCGGGCGCAGTGATTATAGGCTTTCGCTCTAAGATTAAAAATG10.8No Hit
GGTCTCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTGG10.8No Hit
GAACAACCGTACCCATGATAACAGAGTGTAAAAAAACCTGATTATTTTCA10.8No Hit
TGGTAAACCTTCATTTAATGGTATGGTCTTGAGTTTGATTATAGAGCTCC10.8No Hit
GGAAGAAGTAGAGATGCTGGTGGCAGGGCATGAGGACAGCAATGGTTGTA10.8No Hit
GTGCCCAACCACGCCGAACCAGTCACGCCCGACGCCACAAACGGAGCGCC10.8No Hit
TTGTATAGCACTAAATTTGCTGCAGTTCTGCAAGTTGCTTTTAAGGATGT10.8No Hit
GTTTTGCACCACTCAGTCTCCTCCTTTGAGTCTGTGTTTTATTCTTCCTG10.8No Hit
AAGTACGCTCGGCCGGGACAGTGTAAGTGCGAATGGCTCTTTAAATCAGT10.8No Hit
CCCTTTCAGGACTACCACTTGCCAATGCGGTACTTTGGTGCAATTTGAAA10.8No Hit
AAGAGGAAGCACAAGCTCAAAAAGCAAATCTAAAGTTTGGAGAAATAGAT10.8No Hit
GCACTGATACCGGCCGCAGCGATGGCTTCCTCTGGTGCTCCACCACCTAC10.8No Hit
GCTCAAATGCCCCTTTAAAAAAAATCCTGATTACCCTTCAAGCTCTGGCT10.8No Hit
CTTCTGGTCAAACCTCTTTGCCACCACAAGCGCCAGCCCGATGTAGAACA10.8No Hit
GGACAATCTTCAGAATCTCCAAGATGATCTGGAAAAACAGGAAAGGAGCT10.8No Hit
TTCTATCTGGTTTCCCCGATAAATAATCTACCTCACAGGGGAAAAAATTA10.8No Hit
GCTCCGAGGATGGCTGAAGTCCATCGTCTCTGATGCGGTGGCTCAGAGCA10.8No Hit
CTTCAATGGGATCCCTCATGAAACCCAACAAACGATAACTGAACGGGCAA10.8No Hit
GTGAATATTTTCATTGTGGAAGAGAAATTCCCATTGGCTCATGGTTGGCA10.8No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT10.8Clontech Universal Primer Mix Long (96% over 26bp)
GTATATAGAAAATAATATGACTAGTTTGCTTGTTTTTCTACTTATAGTTA10.8No Hit
ACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACTTTTTTTTT10.8Clontech SMART CDS Primer II A (100% over 26bp)
CTGCGTTGATAGCACTGCTTACCCACGTACTCTGCGTTGATACCACTGCT10.8Clontech SMART CDS Primer II A (96% over 25bp)
TTCATAATCTCAATGCCAATGAAGAGAATCTTAGCCTATACCTTTCATCT10.8No Hit
AAACTGGAGTGATGTTAGCAGACCCAGCTTAGAGTTCTTCTTTCTTTCTT10.8No Hit
CTGCTTCCCACGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCAGC10.8Clontech Universal Primer Mix Long (96% over 26bp)
CAACGCAGAGTACTTTTTTTTTTGTTTTTTTTTTTTTTTTGTTTTTTTTT10.8No Hit
ATACTACAAGTTTTCCTTTCTGGAAAACCAGAAGGTCCTCTAGTGAAAAA10.8No Hit
AGTGTCCGGAGTCGTCGTGCCACGCATAGGCGAAGCGCACCGCGTTGCGG10.8No Hit
GGGGCGCGGGGGCGGTGCGTTGGTGCCACTGCTTCCCTTGTTCTCTGCGT10.8No Hit
TCTCTCTTCCTTCCTTCCTCTTTCCCTCCCTCCCTCCATTCCTTTCTTTA10.8No Hit
ACTAACAGCTGTGCGGCATAGAATGTTAGAATAGATGCAGCTGATTTTGC10.8No Hit
TGATACCACTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATG10.8Clontech Universal Primer Mix Long (96% over 26bp)
AGTTTCCGGAGTCGTCGTGCCACTCATCGGCGAAGCGCACCGCGATGCGG10.8No Hit
GGCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTG10.8Clontech Universal Primer Mix Long (96% over 26bp)
GCGCTGGTGCAGCTCTCATATTTGTTGCCCCGGAAAGTGAAGGGGACGAC10.8No Hit
GGGATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGG10.8No Hit
TGCCTACTGTGTGTCAAGCCCTGTGCTAGGATGAACATGATGGATGGGTT10.8No Hit
CTCCCAAATTGTTAGGATTACAGGCATGCAACACTGTGCCTGGCTTAGAT10.8No Hit
TCTAAGGGCATCACAGACCTGGTATTGCTCAATCTCGGGTGGCTGAACGC10.8No Hit

[WARN]Adapter Content

Adapter graph