FastQCFastQC Report
Wed 27 Apr 2022
EGAF00003630201

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003630201
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1156104
Sequences flagged as poor quality0
Sequence length100
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTA14240.12317230975759967No Hit
GTACATGGGGAATAATTGCAATCCCCGATCCCCATCACGAATGGGGTTCA12740.11019769847695363No Hit
GGGTAGGCACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCAGCCCCGGAC12680.10967871402572779No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)