FastQCFastQC Report
Sat 23 Apr 2022
EGAF00003630431

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003630431
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences21
Sequences flagged as poor quality0
Sequence length100
%GC51

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTGTGAGTCCAGTAAATCAGGACGGGGATAATTGCGCGGTTTTGACTG29.523809523809524No Hit
CTCCATGACCATCAGCCGGATGTCCCGGTACTCTGCCTCATCCAGCTCGT29.523809523809524No Hit
TGGTAGGCACGGCGACTACCATCGAAAGTTGATAGGGCAGACGTTCGAAT14.761904761904762No Hit
CTTTCAGCCTTTTGGGTCCTGTATCCCAATTCTCAGAGGTCCCGCCGTAC14.761904761904762No Hit
GTATATCAAAGAGTTACCTGCACCCCCATGTTTATTACAGCACTATTCAC14.761904761904762No Hit
CATCTCCAGAATGAGGGCAAGAACCCTCTCCTGTCAATCTTGTGTGGACA14.761904761904762No Hit
GAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGCAGGCGGAGCTTGAGG14.761904761904762No Hit
GCTCTCTGCCATCGTAGTGCTCATCTCAGGTTTGGGGATATTAGACAGTG14.761904761904762No Hit
GTGCATACTCCAAATTCACACTTAAGTGACCATCACTGTCCTCTTGATCC14.761904761904762No Hit
GTCTTGGATCTTTGCCTTGACATTCTCAATGGTGTCAATCGGCTCCACAT14.761904761904762No Hit
AAGAAGAACACTGTGGCCGCTTGGCAGGACCATTTTTCTGGTCATCGGGT14.761904761904762No Hit
GGTATCAACGCAGAGTACATGGGCTGCTGCTTTCTGCTTCTCTGTCTCCT14.761904761904762No Hit
GTGTATGATTGGGCTAGCTCCTGTTTGTGTGAGTCACATGCAATTCCTTT14.761904761904762No Hit
AAGGATACATGATTCTTTGAATAATAGCCTTCCAATTGGCCTTGTGCCTA14.761904761904762No Hit
GCGGTATATAGGCTGAGCAAGAGGTGGTAAGGTTGATCGGGGTTTATCGA14.761904761904762No Hit
GGGTTGGGACCTCAGGGTTTTCCGGAGCTGAAGAATGACACATTCCTGCG14.761904761904762No Hit
CTGTAGTCCCAGCTGCTCGGGAGACTGAATCTCTTGAGCCTGGGAAGCAG14.761904761904762No Hit
GGAAAGGGAGTAGCTCTCCTTCTATTTTAGCCTTATTATTACGGTATCTA14.761904761904762No Hit
CTTGCTGCCTGTTGTACCGTGGTGACGTGGTTCCCAAAGATGTCAATGCT14.761904761904762No Hit

[OK]Adapter Content

Adapter graph

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)