FastQCFastQC Report
Sat 23 Apr 2022
EGAF00003630530

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003630530
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13
Sequences flagged as poor quality0
Sequence length100
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCA215.384615384615385No Hit
TTCTCGGCGTCGGGCAGTTGCCGCGCATGAATGGAATCGAGCTTTTCCAC215.384615384615385No Hit
GCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGT17.6923076923076925No Hit
GTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTAC17.6923076923076925No Hit
GTTTTATAGATGAGTAAGAGTATTAATGGATAGAAGCAAAAGTTTTAGAT17.6923076923076925No Hit
GTGGAATGGCTTGAAATGGATAAGAAATGAAAAGAATGTAATGGAATCGG17.6923076923076925No Hit
ACTAGGAATGCCGCGGAACAGGTCGCTTTGCGTGCGTGAGTGCGATCCAC17.6923076923076925No Hit
GACCAGTGGAGTGCTCCAGCAGGGTGGCCCCCATGGCCATGCATCAGCTC17.6923076923076925No Hit
GTTCTAGAAGAGGGGATGAGATGCTGTCTTCTCACACTGTACCTGAACAG17.6923076923076925No Hit
CACTGGGTGATGTAATATGGCCAGAGCTGTGGTGCTGTCAGGAGACTGTT17.6923076923076925No Hit
TCGAACGCCCCGGCGCCCGACGACTTCAAGCCCGAGGCCATGCCGCCCGC17.6923076923076925No Hit

[OK]Adapter Content

Adapter graph

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)