FastQCFastQC Report
Wed 8 May 2024
EGAF00003630646

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003630646
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences662900
Total Bases66.2 Mbp
Sequences flagged as poor quality0
Sequence length100
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9050.136521345602655No Hit
GTACATGGGTACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAG7270.10966963342887313No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT7040.10620003017046312No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)