FastQCFastQC Report
Wed 8 May 2024
EGAF00003630858

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003630858
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1007586
Total Bases100.7 Mbp
Sequences flagged as poor quality0
Sequence length100
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTACATGGGTACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAG12060.11969201636386373No Hit
CTTTAATATACGCTATTGGAGCTGGAATTACCGCGGCTGCTGGCACCAGA10130.10053732386118902No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)