FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003630981

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003630981
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences88
Sequences flagged as poor quality0
Sequence length100
%GC52

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGTTGGAGTACGTGGGATACAGGTCATGGGCAGAGCTCCTGGCCTCAGTG33.4090909090909087No Hit
GTTCACAGACGGCCCCTCCTCCGTGTGTCCTCACACGGCAGAGAGAGAGG33.4090909090909087No Hit
GTCTTAGGTGAACTTTCAAAGTCCAGCGTAAGAAAAAGTTTCCAGCAACA33.4090909090909087No Hit
CACTTCTTCCACCCCACTTCTTCCTTCACAAACATGCAAGTTCTTTCCTT33.4090909090909087No Hit
CGGCAGGCAGGCTGGGCCCCAGAGTGGCTCTACCCCTCATTCGCTGGGCA22.272727272727273No Hit
AGCAGCAAATATCGGAAATTATGTATACGGTGTGACAACAGGACGCGAAT22.272727272727273No Hit
GCCACAATGTGCCATGGCTCGCTCTGTGATCTCTACCAGCATTGCAAACA22.272727272727273No Hit
TCATTGCTGGCCTGGTTCTCTTTGGAGCTGTGATCACTGGAGCTGTGGTC22.272727272727273No Hit
AGCGAGAAGGGGTTCAGCGTCGCGGGGAAGTCCGACAGCGGATCGTAGGC22.272727272727273No Hit
AGCCTCAAGCGCAAGCTGTTCCAGGCCCAGGCCGAAGTCGTCCACGCCGC22.272727272727273No Hit
AAAGTAGAAGTAGATTCGTAGTTGCTAGGGGCTAAAATGGGGAGTGGCTG22.272727272727273No Hit
CCACCATGCCTGACTAATTTTTGTATTTTTAGTAGAGACAGGATTTCACC11.1363636363636365No Hit
TTGCACAGCAACGCAATCACGGCTCACTTCAGCCTTGACCTCTCTGCTCA11.1363636363636365No Hit
GATAATGGCTCCCATCCTCGCCAACGCGGATGTCCAGGAGCGCCTGCTTC11.1363636363636365No Hit
GTGCAGTTCCTGGATCAGGAAGTCGAGGCGCTTGCCGATCTCGCCGCCCT11.1363636363636365No Hit
GGGTGGGGTCCACAAGTATGATCTGTAGCCTACCCCTGCTTTAGACCAAA11.1363636363636365No Hit
ATACACAGATGTCTGTGAGATGGAAATACAGCTGTTTTCTTTAGCATCAC11.1363636363636365No Hit
GCCGGGCAGCTTCCGGGAAACCAAAGTCTTTGGGTTCCGGGGGGAGTATG11.1363636363636365No Hit
CGTTTATTGTAAGCCGTCAGCATCGGGATATCATCTGCTTCAAGCTCCTC11.1363636363636365No Hit
TGTCAGCACTCGTCAGGCGGTTGAACCATGTTGATTTCCCTGCGTTTGTA11.1363636363636365No Hit
CTAATGCCTAGTTTCCTGTGTACACTGATTTCCTTATGTGACAGGACATA11.1363636363636365No Hit
CCGCACCTGTTCTCCGACCTCGGCATCCCGAAGGGCACGAAGGGCCGTCT11.1363636363636365No Hit
GGCTCATCCAAGCCCCAGTGCTCCACCCTGCAGTCGTAAACGTCCTCAGT11.1363636363636365No Hit
CTGTGGAACAACACAGGTGGTGAAATGTTGCAGGAAAACAAGCAAACAAA11.1363636363636365No Hit
TCCCAACACTTTGGGAGACTGAGATGAGAGGATCGCTTGAGCTCAGGAGT11.1363636363636365No Hit
AGCCAGAGAAGCAGAAATTAACTTTATTGGTTCTATCGCTTTTGTGTACG11.1363636363636365No Hit
CTGGACACCCTGTTCCGCCGGGCCCAGGATCCGGCCCACCGCAATCGAGA11.1363636363636365No Hit
GGCCAAGGCGGCGCGGGCGCAATATGATCTCGCGCTCGCGGGCGCGCGGC11.1363636363636365No Hit
GTGGCCCGTGTGCTTTCGGTAGTGGCGCGTGAGCTCGTCTGAGCGCGCAA11.1363636363636365No Hit
TCCTCTTGAAACAGCTCACCTTTAACTCCAATTTTCTCTTGAGAATCTAG11.1363636363636365No Hit
CCTTAGCTGTGCTCGCGCTACTCTCTCTTTCTGGCCTGGAGGCTATCCAG11.1363636363636365No Hit
GCACTGCCCACGGTGGGCGGGCGGGCCTCTCTACTCGAAGGTGACCACGT11.1363636363636365No Hit
GCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGA11.1363636363636365Clontech Universal Primer Mix Long (96% over 26bp)
CTGGGATACCGCACTCGCGTCGCAGTTCGCCGGCCCACCGGTGTGGGTAC11.1363636363636365No Hit
TGGATATACCGGGACCTCATGCAGCTTGGCAGATATCTGAGAAATGGTTT11.1363636363636365No Hit
CTTCCAGATACTACAAAAAGAGTGTTTCAAACCTGTTCTATGAAAGGAAC11.1363636363636365No Hit
CCGTCACACTATAATTGGCTCCATTTTCATTGTGTATAAATTTACAGGTG11.1363636363636365No Hit
TTTTTGAGGTTTGCAATTTTATTAAGAAAACAAAAATTCAACCTATACAA11.1363636363636365No Hit
CTATATGAGTTATATGTGCATACCTGGTTTTACAAATGCAGGAAAAAAGG11.1363636363636365No Hit
GTTATAGAGCTAAGGTACAGACAATTATCTGTTAAGAATAGTAACAATAG11.1363636363636365No Hit
GGCAGAGTACTGTTCATAATTCTTTTGGGTGTTGTTTTCCTCTCCTTGCT11.1363636363636365No Hit
TATTTGCCTAAAAGGTAAATTCTGTTTACACTGTTGGTCATTTGGTTAGC11.1363636363636365No Hit
GTAGTTCACGGTGAGGCCGTCGCGCATCGCGATGACCTCGTCGGCGAGCT11.1363636363636365No Hit
ACACATGCCATGTACAGCATGAGGGGCTGCCAAAGCCCCTCACCCTGAGA11.1363636363636365No Hit
AGATATAGTTAAATACAACACATACATGAGGAATACTAGTAAACAACAGC11.1363636363636365No Hit
GAGTAGTTAAGTAGCAATCTAGACACCTCACCCAGCCTCCCAGCCAAGTA11.1363636363636365No Hit
GAATGCACACGATTTAGCACAAGTGGAACACCAAGTAGGGAAAGTCAGGA11.1363636363636365No Hit
GCTATCATAATCTTTGTTCCCGTTCCTCAACTGAAATCTTTCCAGAAAAT11.1363636363636365No Hit
CCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGG11.1363636363636365No Hit
GAATACCGACCGCCGCATCGCCGGTCGGCATCGTTTATGGTCGGAACTAC11.1363636363636365No Hit
GGGCCGCATGGTGGAACGCCTGCACGCCGACATGGCGCGCCGGGTGCTGG11.1363636363636365No Hit
GGCACCCAGCACAATGAAGATCAAGATCATTGCTCCTCCTGAGCGCAAGT11.1363636363636365No Hit
GAGCTGGTCACGCTGCCGGGCATCGGACGCTCGACATCGGCGGCCATCGC11.1363636363636365No Hit
AGAGGAGGCAAGGCCACATTGTCGCCATCAGCAGCATCCAGGGCAAGATG11.1363636363636365No Hit
CCATTATATATGCTATAACCAAATTTGCCCTCATGATCTGCCCGTCTTGG11.1363636363636365No Hit
CCGCTGACCGCGTACGCCGGGGCCGGCCAGCCCAGCTCGTGGCGGAGGTA11.1363636363636365No Hit
GCTTACTATCCTTGTCCTGTTTTACCGTTACCTAATGGGAAGACAGCTTT11.1363636363636365No Hit
ATATCACTCTCTAAATTTTATAGGTGTTTTTGTCTCTCTGGGAATCTCCC11.1363636363636365No Hit
CTTCCTGGGGACAATGTGGGCTTCAATTTCAAGAATGTGTGTGTCAAGGT11.1363636363636365No Hit
GGGTGGGGTTATGCTGTGATATTAATTTTCCTCAATAATGTTTTTCTTGA11.1363636363636365No Hit
CATGTAGCCGGGACGCCCCCGCCCACCTGCGCGCGGCCGTGGCGGGTCCC11.1363636363636365No Hit
GGGCTTATGTCACTTAGGTGAAGTTGAGCTCCTTTTTCTTTTTAATCTCC11.1363636363636365No Hit
TCCAAGCAGCACTCCCCTTGTTATTGGTCATGTGTGTCTGAATGTCACAG11.1363636363636365No Hit
GGCTCTAACAGCTAGAGCCAGGCCAGGCATCAGTTAGAATCAGGGCTGGA11.1363636363636365No Hit
GTGCTACTCTTGGCATTAGCCAAGAAGAATGTCAGGGAAAACAAGAAGAA11.1363636363636365No Hit
GTACATGGGAAGCAGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAA11.1363636363636365Clontech Universal Primer Mix Long (95% over 21bp)
ACAGCCGGGCAGCGGCAGGGTCTGCACACCACAAGCTCAGCTACCTGGGC11.1363636363636365No Hit
TAATCCCACAGATGGTAGCTTCGCCCCATTGGCTCCTCAGCCAAGCACAT11.1363636363636365No Hit
GCTCCACTTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATC11.1363636363636365No Hit
ACGCAGAGTACATGGGAAGCAGTGGTATCAACGCATGTAACTTTTACACC11.1363636363636365Clontech Universal Primer Mix Long (95% over 22bp)
GTATTAAAGTCAGACAGCTGAGTCTGGGAACATCTTCCACATTTTTGTCT11.1363636363636365No Hit
ATTGCAATCCCCGATCCCCATCACGAATGGGGTTCAACGGGTTACCCGCG11.1363636363636365No Hit
GCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATACCCTGTCTCTT11.1363636363636365Clontech Universal Primer Mix Long (95% over 21bp)

[OK]Adapter Content

Adapter graph