FastQCFastQC Report
Sat 23 Apr 2022
EGAF00003630982

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003630982
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences88
Sequences flagged as poor quality0
Sequence length100
%GC51

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCAGAGTACATGGGGACAACTCGGTGGTGGCCACTGCGCAGACCAGACTT33.4090909090909087No Hit
TCGCTGGACACCATGAATCACACTGTCCAAACCTTCTTCTCTCCTGTCAA33.4090909090909087No Hit
TCACCGTGCCCCTGCCCCAGAATTCACACGCTGAAGCCCTCGCCCCAGCA33.4090909090909087No Hit
CACCCGTCCATTATTGCATTTATTCCTCTCAGCAAACTGTAAGGTAACAA33.4090909090909087No Hit
ACATGGGGGTGGGGTGGTCTCCCCACCTCCTCACATTATGCCTACACGAA22.272727272727273No Hit
GTATAGGCCACATTGAGATGGGCCGCCTCATCACTGGAGCCACCAGCCCA22.272727272727273No Hit
GATATCTGGTGAATCACCCTCCCAGATATGCATTTTAAACTGGTCAAATA22.272727272727273No Hit
CCAATGGCGGAATCATGAGCCGCTTCGGGCCGGTGCTGAACCTGTTCGGT22.272727272727273No Hit
CATTTACCAGATGCTACTGTCTATAAAATTATTTTTTACATACATAGTAT22.272727272727273No Hit
GTGTTCTGGACACCAACAAGGACTGCGAGGTGGACTTTGTGGAGTATGTG22.272727272727273No Hit
ACTTGTAAACAAGGTGCGGGGGCGAGAGAACCAAGGTCCGGCGGTAGCCT22.272727272727273No Hit
GCACCAAGGTGCTGGTCTACACCGACGGCGACAAGGCCAAGGCCGACATG11.1363636363636365No Hit
ATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGG11.1363636363636365No Hit
TCGCGACCCCGTCCGCGGCCGCCGTCGCGCTGCTTCGCCTCGGGGCCGCC11.1363636363636365No Hit
TCATAGCTCACTGCAACCTCCACCTCCCAGGCTCAAGCCATTCTCCCACC11.1363636363636365No Hit
GAATAATGGAATAGGACCGCGGTTCTATTTTGTTGGTTTTCGGAACTGAG11.1363636363636365No Hit
TCTTTTCCCACCGGGCCTTCAGTCACAGACGGGGGCTGGGGTGGTGGCGT11.1363636363636365No Hit
CTCTGGTTGGGGTCTTCAGTAAGTCAGAGCTGTTGCCTGGGCGTAGTAAT11.1363636363636365No Hit
CTCTGACACTATGTAATTCCCTTGAAGAAATGCTCAGGAAGCTCATGATG11.1363636363636365No Hit
CAAATATACAATAAGCAAAACAACCTTCATGGTAAGATAGCCTAGGTCCC11.1363636363636365No Hit
GCGCTGAGTGAACCCATCCTGCCGTCCTTCTCCACTTTCGCCAGCCCGTG11.1363636363636365No Hit
GCGTTGATACCACTGCTTCCCATGTACTCTGCGTATATAGCTGATACTCA11.1363636363636365No Hit
GAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGG11.1363636363636365No Hit
CTCCAGAGGTAACTGTGCTCACGAACAGCCCTGTGGAACTGAGAGAGCCC11.1363636363636365No Hit
ATTCCTCTTGATTGAAAATGTATTTTTTATGATACTCTACTAGGCTTTCT11.1363636363636365No Hit
GAGTTGGGTTTCTCAGAGAAGCTATATGGGGAGTTTTGGTGTATAACAGT11.1363636363636365No Hit
GCTTATTCGAGATAAGGATGAATTGATACACACACAGAACCTGATACGTG11.1363636363636365No Hit
CTCCTGCGCCGCGGAGGACATGTCGCCCGCGAAACCGAGCACGCGCGTCA11.1363636363636365No Hit
AACTCAGCGTGGCCGACGTGCTGCGCCTGGCCGGCGGCGAAAGCGCCGTC11.1363636363636365No Hit
GGGCCTCGTGGTGTGCCGGGGCACGTCCGTGGTGCTAATCTGCCCGCAGG11.1363636363636365No Hit
TCGTTCAATTCCGCAAGGCCTGCCTTCTCCGCCGCTTCCAGCGACAGGAA11.1363636363636365No Hit
CCCTTGAGGTGGAGCCCAGTGACACCATCGAAAATGTGAAGGCCAAGATC11.1363636363636365No Hit
CAACTAACAGTGTTGAAGCTTTCTTTTGATAGAGCAGTTTTGAAACACTC11.1363636363636365No Hit
GTATGGTGGTCACCTTTGCTCCAGTCAACGTTACAACGGAAGTAAAATCT11.1363636363636365No Hit
GGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCCTGTCTCTT11.1363636363636365No Hit
TTCATGAAATCAACACACAGCTTTACTGTCATTCGCCATAGAAGCCGATA11.1363636363636365No Hit
CTATTAGCAGCCTAGGCAACATACCAAGACCCCATCTCTAAAAAAAATTA11.1363636363636365No Hit
AGACAAGGAAAACCTAGTTACACCGTGGATTGGTATTACTCACAAACAAA11.1363636363636365No Hit
CTAATGAGGAAAATGGGGAGCAGGAGGCTGACAATGAGGTAGACGAAGAA11.1363636363636365No Hit
AACCATAGCTGGATTTTCCAACTTGCCCTTTTCCACAGACCTTGTCTTCT11.1363636363636365No Hit
ATATATTAAGTACTAGGCACTGCTCCACATCATGATTATGCACTCTGTAA11.1363636363636365No Hit
GGTTATTGAACTTTTAGATGGAATTCGCACCTGTGAACTTGCTCTTTCAT11.1363636363636365No Hit
TTCCCAAAGAGGGCGCTGACCTGTTCTGGCTTCAGCAGCCCGGGTGTGTC11.1363636363636365No Hit
GTTCATGACTTTAACAAGAAACTTACAGCCTATTTAGATCTTAACCTGGA11.1363636363636365No Hit
ACTAAATAAATCAAGTGTTACTTTTGGGACATTACAAAAATGAGAAGGTT11.1363636363636365No Hit
CTCCGGCCCCGGCCGGGGGGCGGGCGCCGGCGGCTTTGGTGACTCTAGAT11.1363636363636365No Hit
TCTTAGAGGGACAAGTGGCGTTCAGCCACCCGAGATTGAGCAATAACAGG11.1363636363636365No Hit
TTTTGATCCTTCGATGTCGGCTCTTCCTATCATTGTGAAGCAGAATTCAC11.1363636363636365No Hit
GTCATAAAGGAGCAGTGGAAGGCATTGGTCTGAACTATCACATTCATTCT11.1363636363636365No Hit
GTGAGGTAGCTTATGCCTGTAATCCCAACTCTTTGGGAGGCCAAGGCAGG11.1363636363636365No Hit
TTCACAGGGACCTGAAACCACCAAACTTACTGCTGGTTGCAGGGGGGACA11.1363636363636365No Hit
ACACCGGGAAGCCCTGCGGCACCAGCTCGCCGGGCTGGGCCAGCCGCTTG11.1363636363636365No Hit
GGTCTTGAACTCTTGACCTCAGGTGATCCACCCGCCTCAGCCCCCCAAAG11.1363636363636365No Hit
TATCAATATTAAAAAGCAAGCAAGCAGAATTTGGAATTCATCCAATCCAA11.1363636363636365No Hit
GCCTCAGCCTCCCGAGTAGTTGGGGTTACAGGCGCCCACCACCACACCCG11.1363636363636365No Hit
GTCAGAGTACGGCTCCTGGGACGCTTTTGCTTATTTTTTGTACGGCTTTT11.1363636363636365No Hit
CTGTGGTGGTGTCCATAACTCCATACCTAGATCCATCCGCGGTGATGGCA11.1363636363636365No Hit
CTTGCGCAGAAAACAAATAAAGCCATGCCAATCTCATCTTGTTTTCTGCG11.1363636363636365No Hit
TATCAAATGTGACAAGGAAATTATTTTAGATTTAGTCCTACTGGAACATA11.1363636363636365No Hit
GTTTAATGCCACCCACACTATTTCCTAGACCTACATGTATAGGTGCATGG11.1363636363636365No Hit
CGCCACGGGCGCCGTGGTGACCTGGTTCGACCACCCGGTCCCTCGGGACC11.1363636363636365No Hit
CCACAGGGCCCAGCCGCGACCGCGCGCCCACGTGTCGTCGTCGAGCGCAA11.1363636363636365No Hit
GGTGTGCAACGCACTGCAAGCGCCCAGTTCCTCGGAGGACGGCGCGTGGC11.1363636363636365No Hit
CCTCTAAGAAGTTGGGGGACGCCGACCGCTCCGGGGTCGCGTAACTAGTT11.1363636363636365No Hit
TTAATGTACAGCGAAGGCATGGCCTGTTAATTCCTTTCTTCTTCCCATTT11.1363636363636365No Hit
CTATAGCTTTCAAGATGCTGCGCAGCAGGCAATGAGAGACAGTAATCCCC11.1363636363636365No Hit
TCTTAGTTGTTGTATTCTTGAAGAGCCTGGGCCATGAAGAGCTTGCCTAA11.1363636363636365No Hit
GACGAAAACAGCAGACGGAAAAGTACTGACCAGCGTCACACAAAAACGGA11.1363636363636365No Hit
ACGCCAGCGTCGACGTGTACCTGGCGGCAGGCTACCAGGCGCCGATTCCT11.1363636363636365No Hit
CTTTAAAGGAGCTTAAACATACTGGGAGATTCCCAGAGAGACAAAAACAC11.1363636363636365No Hit
CCCTGAGATGGGAGCCATCTTCCCAATCCACCGTCCCCATCGTGGGCATT11.1363636363636365No Hit
CCCATGGAAAGCTGCTGGGATAGAGTATATGAATGGCCCCAATCCTTCAT11.1363636363636365No Hit
GCCATAATGCTTCTGATGCTGATGTAAAAGGAAAATCTGTTCACTGATGA11.1363636363636365No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCGTGCC50.094.04
CACCGTG50.094.02
ACCGTGC50.094.03
TGCCCCT50.094.07
GGCCATG50.094.094
CGTGCCC50.094.05
TCACCGT50.094.01
CCCCTGC50.094.09
GCCCCTG50.094.08
GTGCCCC50.094.06