FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003631084

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003631084
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences39
Sequences flagged as poor quality0
Sequence length100
%GC64

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTCCGTACCTGCCGCTACCAGCCTATCCTTGACCCTGCAGCCGGCCCGC25.128205128205128No Hit
GGGCCCTGCAGCGCGCCGGCGGCAAGATCGAGTTCGTGCAGGTGCGGCAT25.128205128205128No Hit
GAGCTGCAGAGCTGTATCAAACGCACCAGCCGCAGCGAGATCTGCAGCCA25.128205128205128No Hit
TAGGGAGGCCTTGTTGGCTGACGGTCGAATGTCCACCCATATCAGATGGC25.128205128205128No Hit
GCCCTGATGGGCGACGATGCCTTCGGCATCAACCGCAGCACCATCGAAGG25.128205128205128No Hit
ACCGGAGCCGATGGCGACGATGCCCTGCTCGGGCTCCAGCACGTCGCCGT25.128205128205128No Hit
CCGAAAAAGATGGCATGGATATGGTCTATATGACGAAGACAATGAAATAA25.128205128205128No Hit
CCACGTGGCTTTCTGCCGCAAAATGCACGATCGCCCGTGGTGCGTGTCGG25.128205128205128No Hit
CTCCAGCGTCACAGAGAAGTTCCCTGGTCAGGCCGCAGGAGCCGCCGACA25.128205128205128No Hit
AGCCCCGGGCGCGGCACCTGCCGCGCCACCCGGGCGTGCCGCTGCCCGCG25.128205128205128No Hit
GTCCACTACGTGCAGACGCTGGGGACGAAATCGCCTGGATGGGAATACAC12.564102564102564No Hit
CGTCTACCCCGCCATCAACCTGAACAAGTCGGGCACGCGCCGGGAAGAAC12.564102564102564No Hit
CGTTTGACGAAACCGTGATGACCTTCGTGCGTGAAGGCGGACGCGGGCTC12.564102564102564No Hit
GTCTTTGCTGCCTTGACGATCGTGTCGATCACGTTTTCGACCTGGCTTTC12.564102564102564No Hit
GAGTCCGACTCGGCCGTCAGCAGCAGGGCCGCGCCCTCCAGGCTGAAGCC12.564102564102564No Hit
AGCCGGTATTGGCCGAGAACGGGCGGTCGACGCTGTTCTGGCGCGCGTGT12.564102564102564No Hit
GGCCGAGGTCATTCACCGGCGCGGGCCGTGGAAGACCAAGCAGGCGGTAG12.564102564102564No Hit
CTCTCCTGGTCTGAGAGTCCAGGCCTCAGTTTACCCACTTGCTGAGTCTT12.564102564102564No Hit
GTGCCGCGATGTCGGGCGCGCCGCCCCGCCGCGCCCGTCATAGCGGCACC12.564102564102564No Hit
GTCCCGCGCCACTATGCGCAAGATCAAGCAGAACCTGTTTTGGGCCTTCT12.564102564102564No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG12.564102564102564No Hit
CTTCTTCGGCGTGCTGCTGTCGCCCGTGGTGGCGGCGGCGGCGATGGCGC12.564102564102564No Hit
GGCCAGCGCGGCCACCACATGGGTGGGCGGCGTGTAGCGCCACTGGCCGG12.564102564102564No Hit
CCACAGCGTCGTACCGGTGCAAACCCAACAGAAATCATCCGTCATGAGAT12.564102564102564No Hit
TGATTATGGAGGCCGAGAAGTCTCACAGTCTGCCATCTCCAAGCTGGAGA12.564102564102564No Hit
ACAGGATGCCGATTTTGTCGTGGTGGCATTTCAGATTGGCGGTTATGAAC12.564102564102564No Hit
GCGCACGCTGACTCGCGCCGAGTGGGTGGGCGGCATGTTGCCGCTGGGCG12.564102564102564No Hit
ATCCGCGCCTGCGTGAGATGAACGTACAGTTTCCGGCGCAAACCGTGCGC12.564102564102564No Hit
ATAGCGAGCGACGCGCTCGGGAATGAAGCGACCAGCAGCCCGCAGACTGC12.564102564102564No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)