FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003631429

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003631429
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences71
Sequences flagged as poor quality0
Sequence length100
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGTTTTACTTTAGCACCATTCTTAGTGGAGCAGGATTCTTGATCATGGGG45.633802816901409No Hit
CCCCACCCCAAGGCTGCTGAAAGAATCTGGTGGTCAAGGGCAATCTGGTA34.225352112676056No Hit
ATCCTGTAGGGGGCGCTTCAGAGCAGAACTGAACTTTTTGGAGCGTACCA22.8169014084507045No Hit
GCTTTATTCTGTTGTGGCAGGAGTTCCCGGGCCCCTGGGCACCACCTCTG22.8169014084507045No Hit
GTCGTCGCCGCCACGGGGGGCGTGCGATCGGCCCGAGGTTATCTAGAGTC22.8169014084507045No Hit
GCCAGTGGAGCCGATGGAGAAGGTGGCAGTGGTAACCAGGTGCTCACTCA22.8169014084507045No Hit
GTCCTAGATGTAGTAGAGCGGCACCTCGCCACACAGGGTGCTCACGGCCA22.8169014084507045No Hit
GTCCTAAGGCGAGCTCAGGGAGGACAGAAACCTCCCGTGGAGCAGAAGGG22.8169014084507045No Hit
ATCCACGGCCGCCACTCCAAGGCCGAGATCGACGCGCGCGTGCGCGAGTG22.8169014084507045No Hit
GCAAAGAGGTCCTGATGGAGAGCCCGCCGGACTACTCCGCAGCTCCCCGG22.8169014084507045No Hit
GTCAGGCTCTGCCTCGCTCTCCGACAGCCCCGCGCCCGTGGCCAGCAGCT11.4084507042253522No Hit
CAACCATACTCCCCCCGGAACCCAAAGACTTTGGTTTCCCGGAAGCTGCC11.4084507042253522No Hit
CTTTAGCGATGATCAGGTTCTGTGGTTCGCCCACCATGGTCATTACGCCG11.4084507042253522No Hit
CAGCAGGAGCGCCCCTGGCCACTGAACTGCGCTGCCAGTGCTTGCAGACC11.4084507042253522No Hit
CCCCCTTCGCGGGGGGGATGCGTGCATTTATCAGATCAAAACCAACCCGG11.4084507042253522No Hit
GTTGTAAGAAAGCCCTTAAATAAAGAAGGTAAGAAACCTAGGACCAAAGC11.4084507042253522No Hit
TGGCCATACTGCAGCACTTTAAAGGACGGTGTCTTTTTCTGGACAGCTGA11.4084507042253522No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAGAAA11.4084507042253522No Hit
GTGCGCGCTATCCTTGGGGTGGGGAGACCTGGCGCTCACCCAGCGAGCTC11.4084507042253522No Hit
ATGATGTCCCTTGTGCCTGCAACGCTTGCGCCGGGAGGTTGGGGCACGAC11.4084507042253522No Hit
GCGGCTTAATTTGACTCAACACGGGAAACCTCACCCGGCCCGGACACGGA11.4084507042253522No Hit
GGAATAGAATGGATTCAAATAAAATAGAATCGATTGCAATGGTATTGAAT11.4084507042253522No Hit
GGCTCCGACAATGGCTCGCCCAGCCGGAGCCCACATGTCGAAGCCAGATC11.4084507042253522No Hit
TTTGACTACTGTTCAATAAAATTTATATGAGGACATTGATTTGGACTGAG11.4084507042253522No Hit
CCACAGGAACAGTTACGATAACTTAAAAAGAAATGCTTTCCACACTGAAC11.4084507042253522No Hit
ACTAAGTGATGACTGTAAAGAAGGCTGATCAGCTTAAACATGGAAACATA11.4084507042253522No Hit
AGATGTAGTAGAGCGGCACCTCGCCACACAGGGTGCTCACGGCCATGCCC11.4084507042253522No Hit
ACACCAATAAAAACACATGTCAGACATACAGAAATTGCAAATTGCTGAAA11.4084507042253522No Hit
GCTGTGACAGAGCCAGATGGCCTGCAAAACCTGAAATATCTACTAATTGG11.4084507042253522No Hit
GCTCAGTACGAGAGGAACCGCAGGTTCAGACATTTGGTGTATGTGCTTGG11.4084507042253522No Hit
GCCCTTTTCTACTTTTTAATCACTCCCTACTACTACTACTTCTCTTTTCT11.4084507042253522No Hit
GTAATAAAGGATCACAAAGGGATACAAAACCCACCACTGAGAGAATGGAA11.4084507042253522No Hit
CTCCACCGTCGCCCAACGAATGGCTGAGATTTTCGAGATCGACATGGCCA11.4084507042253522No Hit
GTACTTGGTAAAGGCCTTCTTCTTAGATTTATGTCAATTCTTATAGAAAC11.4084507042253522No Hit
GCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACACGTGCGCTCGTGCT11.4084507042253522No Hit
GAATGGCCCTCGGGATCGACGATGAGCAGGCCATCCGACTGGTAGTTGCC11.4084507042253522No Hit
GGCAGGCAGGCAGAAAGACAACAGCTGTATTATGTTCTTCTCAGGGTAGG11.4084507042253522No Hit
CGCTCAGGCAACCCGGTGCTCATGGGCTTCTCTAGTGGAGATGGCTATTT11.4084507042253522No Hit
TAATGGAATAGGACCGCGGTTCTATTTTGTTGGTTTTCGGAACTGAGGCC11.4084507042253522No Hit
TATTAGAAGAGACTTGTCAATAGCCAGGCACAGAGGCTAATGCCTGTAAT11.4084507042253522No Hit
GCGGCTACCATATCCAAAACTATTTCACTGCCGTTTCTACTGGAAATCTC11.4084507042253522No Hit
CTGCGACACCGGCATCGGCATTCCTGCGCAGCATCAGGCCCGCGTCTTCG11.4084507042253522No Hit
GTACTAAGTGTAGCATTGCCGTCTTGGCGGCCACATGCCTTGCGTGAGTT11.4084507042253522No Hit
AAACAAGGCAGAAGAAAAAAAGAAGATCTCTTGAGATTCTCTTACCCATG11.4084507042253522No Hit
GAATGTGGCCATTGTTGAGCCCAGTGAGAGACATTTCTACCAGCCAATCT11.4084507042253522No Hit
GGGTCAGTGGAAGCCCCAACGGGAAAGGAAACGCCCCGGGCAAAGGGTCT11.4084507042253522No Hit
CCTCTTTACAGAAATACCAGCGGCCCTGACCCCGGGGAACAGTCGCATGA11.4084507042253522No Hit
CCACGAGGCCAGTGGAGCCGATGGAGAAGGTGGCAGTGGTAACCAGGTGC11.4084507042253522No Hit
TCCTCAGGCAGGCAGGATCCTGTGACAGTGGCCACAGCAGACCGCAGAAG11.4084507042253522No Hit
CCTCTCTCTCACCATGTGATGCACTGGCTTCTCCTTCACCTTCCGCCATG11.4084507042253522No Hit
GTCTCGTTCGTTATCGGAATTAACCAGACAAATCGCTCCACCAACTAAGA11.4084507042253522No Hit
GGCCGAAGGCAAGTATTTTTTTCTTCAACTTAGATGTCCGGTATTAAGTA11.4084507042253522No Hit
GCCCGCAGCCATGAGTTCAGCCGGGAGCCCAGCCTTAGCTGGGTGGTGAA11.4084507042253522No Hit
CTCCCCACCCAGCGGGGAGGTGGCGGTACTCCAGCTCTTGCGGTATTCCT11.4084507042253522No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCGATC11.4084507042253522No Hit
TCCACTGACCCTGCTCACCGGAGGCGTCCTAGATGTAGTAGAGCGGCACC11.4084507042253522No Hit
GTTTCCAAAGCGTACTATGGTTAAGCCACAGCCTTTAACTTCAGACTTAT11.4084507042253522No Hit
GTTTTTGGGATACTATGTAATTTTGCCCTCAGTAGGCAAAGATCGACCAA11.4084507042253522No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)