FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003631430

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003631430
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences71
Sequences flagged as poor quality0
Sequence length100
%GC54

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTCAAGTGATGGCCGGTGAGCTGCGGAGAGCTCATGGAAGGCGAGTGGG45.633802816901409No Hit
GCCTTAACCTCCTGGGAATGCAGCCCAGCAGGTCTCAGCCTTATTTTACC34.225352112676056No Hit
GCAGCAAGATGGATGTGGGCAGCAAAGAGGTCCTGATGGAGAGCCCGCCG22.8169014084507045No Hit
ATGCAGGCTCAGCACCCTCCGGAGGGGACCCGGCCTTCCTGGGCATGGCC22.8169014084507045No Hit
AACCAGGAATGGTCAGCAGAGAGGGTTGCTTCATCAGACTAAAGAAAGGG22.8169014084507045No Hit
GTGGAGCCGATGGAGAAGGTGGCAGTGGTAACCAGGTGCTCACTCAGGGC22.8169014084507045No Hit
CAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACGTCGCTATG22.8169014084507045No Hit
GGTGGTGGTGGTCCTCATCGTCGTGGTGATTGTGGGAGCCCTGCTCATGG22.8169014084507045No Hit
TTTCAAGAATGGCCACGTTGCGGCACAGCACCTCGACCACCGACAGCTCG22.8169014084507045No Hit
GTGGAAGCCCCAACGGGAAAGGAAACGCCCCGGGCAAAGGGTCTTTTGCA22.8169014084507045No Hit
AATACATGCCGACGGGCGCTGACCCCCTTCGCGGGGGGGATGCGTGCATT22.8169014084507045No Hit
CGTCGTGGTGATTGTGGGAGCCCTGCTCATGGGTCTCCACATGAGCCAGA11.4084507042253522No Hit
CTTCATTGCTTCTTACTTAACTTGAGTTTGGACCATAGAGAAGTCATTCT11.4084507042253522No Hit
CATCGGAAGCTGCCAGATGTGAAGAAGGATGACATGTCTGCACGGCGGAC11.4084507042253522No Hit
ACTGAGCACACCTCGCAATCTCTGATCTTCGAACCCACTGAAAAAGCACA11.4084507042253522No Hit
GGCCCACAGTTGCTACAGGCTATGTATTCTCTGCTAAACAGCTCAATCCT11.4084507042253522No Hit
GAAAGGACTTCTTTATCATGCCAGCTCAGGGAAACTGGGCCCCTTCTGAT11.4084507042253522No Hit
CTTATCTTTGAACGAGTTCTGCTACTAATTTCCTTAATTAATGATACAAA11.4084507042253522No Hit
GAATAATGGAATAGGACCGCGGTTCTATTTTGTTGGTTTTCGGAACTGAG11.4084507042253522No Hit
ATTCCAATATCTTCCATTGCTTTCCATTCCATTCAAGTCCCTTCCATTCA11.4084507042253522No Hit
TTATTCTGTTGTGGCAGGAGTTCCCGGGCCCCTGGGCGCCACCTCTGCCC11.4084507042253522No Hit
TCGAATGGGTCGTCGCCGCCACGGGGGGCGTGCGATCGGCCCGAGGTTAT11.4084507042253522No Hit
CTCTGAGGGTGTGTAGGTGGAGCCACTGATGGAACGGCAGCTAAAGAAGA11.4084507042253522No Hit
TCTCTAATCACACATATCTATCCAGTGATGTAAATGCAGTGAAAAGGGCT11.4084507042253522No Hit
GAGTGGAAAGTTCACACTGTGACGGTATCTTACCAGAAAGGGACGGCTAA11.4084507042253522No Hit
CCTTTAAGTTTCAGCTTTGCAACCATACTCCCCCCGGAACCCAAAGACTT11.4084507042253522No Hit
GTAGAGACACCACCCATGGTGGTTGTGGGCATTGTGGGCTACGTGGAAAC11.4084507042253522No Hit
CCCTGTGCCCAGAGGCATTCCATCAGCTTGCATTTTGTAGTTCCTGCCAT11.4084507042253522No Hit
GGTCAGTAATTCCTGGAGGAATAGGTACCAAGAAAAAAACGAACCTTTGG11.4084507042253522No Hit
GTGTGTGGGACCATGTCCAGCCCTCTCCAGTGTATCCACAGCCCCGACCT11.4084507042253522No Hit
CTGCAGCTGTGTCTCTCTTTCCTCTTCTGTTCCTGTAAGGGCAGGGCCTC11.4084507042253522No Hit
CCATAAACGATGCCGACCGGCGATGCGGCGGCGTTATTCCCATGACCCGC11.4084507042253522No Hit
GTTTAATAGCTCCAGTTTTCCCCAAATTTCGTTTTTATCATCATCTGGTT11.4084507042253522No Hit
CATCTCTTCATTGATGATCCTGTCCTGTTTATTCATCCTCTAGGAGGTTA11.4084507042253522No Hit
CACGTGCGCGAGTCGGGGGCTCGCACGAAAGCCGCCGTGGCGCAATGAAG11.4084507042253522No Hit
AGTTAACAGTGAGGTTCCGCTCCTGGATGATCTCCTGCAGGGCATCTGCA11.4084507042253522No Hit
GCTCCAGAGAGCATCCCCAGTCTTGAGGCTCTCACTAGAAAAGTCCACAA11.4084507042253522No Hit
TTACAACATTGCGTTAACAGTCAATGACACTTCTTGAATAAAAATATTGT11.4084507042253522No Hit
GCTTGCCCCTGGGCTTGGGGCTGCCGTCCCCACTCAGGCGTGGTCTGCAG11.4084507042253522No Hit
GAATTCTAGAAAAATGGTCGCCAAGGTGACAGTAGAGCTTAAGTGAGTTT11.4084507042253522No Hit
GTTTAAGTGATTCTCCTGCCTCAGCCTCCCGAGTAGCTAGGATTACAGTC11.4084507042253522No Hit
TCCTTACTGACCACTGAGCGAGTAGTCAGTACTCGAGCTAACGCCTCAAG11.4084507042253522No Hit
GAGCCAGTCAGTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCAC11.4084507042253522No Hit
ATACAGGAACCCCTTCACTGCCGGATTCGTGGTCGTGCCCCAACCTCCCG11.4084507042253522No Hit
CTCCACATGAGCCAGAAACACACGGAGATGGTTCTGGAGATGAGCATTGG11.4084507042253522No Hit
TTGATTGGCTCATCTGATCCGTCGGCATCATTCTGGAGAAATGTACTCAA11.4084507042253522No Hit
CTGTTAAGCATTCGCTCCAAAATGCTGCTGTCGCTCTCTTTTTGCGTGGC11.4084507042253522No Hit
AACCTGTTCCCCTCCATCAACGTGCACAAGGTGAACCAGAACACCATCAA11.4084507042253522No Hit
GTCTGATCTTATTTATTTGTTACTCAAAAAATCTTATTTCTGACTGGATT11.4084507042253522No Hit
TGTCACCCCAGCACTTTGGGAGGCCGGGGCGGGCAGATCCACTGGGGTCG11.4084507042253522No Hit
ATCCTTCCCCTTTGATGCCCTTCCTCTTACTTTTCCTCCTCCACCTGCCC11.4084507042253522No Hit
GGCGGGGACAGGCGGGGGACCGGCTATCCGAGGCCAACCGAGGCTCCGCG11.4084507042253522No Hit
GAGCTCAGCTATCGCGCCGGTTGCCGAACAGGTTGTGCGCATGACCGCCC11.4084507042253522No Hit
GATTACATCTTGGTGTTTTTCTTTTTCAATATCAAGTTGCAATTTTGTTT11.4084507042253522No Hit
CTTCAACAAATGGCCAATCTTTTCAAAAGAAGACATGGTTTTCCAGCATG11.4084507042253522No Hit
CGGCGTGCCGCGACAGCGGCGGCAGGGTGTCTTCGGAATCGTCGTGATCT11.4084507042253522No Hit
GCCTACTGCCGAGGCCCCAGCGACCTATGCTGACGGGTTGGAATCGTAAG11.4084507042253522No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)