FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003631697

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003631697
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences140
Sequences flagged as poor quality0
Sequence length100
%GC45

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA75.0Clontech SMARTer II A Oligonucleotide (100% over 25bp)
AGTGTATGCTGTGGTTAGAAGGTCTTTCCTTCTGGGAAACAGAGAAACTC42.857142857142857No Hit
GAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGG32.142857142857143Clontech Universal Primer Mix Long (96% over 26bp)
TCTAAGTAGTCATAAATAAAACTATCAACTTTTGTGGCCCAGAAGTATAT21.4285714285714286No Hit
GTATAATATAAAACTACAAAAGTAAGACTGCTCATTTCCATGTACATTTA21.4285714285714286No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAA21.4285714285714286No Hit
TTTTGACACTCAATAATCTTCATACCGGAGAGTCAATCAAAGCGGAGTTT21.4285714285714286No Hit
ACTACATTCCGGTCATGGCACCAGTTATATCCCTCCATCACTAGCTGGTG21.4285714285714286No Hit
CCTCTGAGAGGGCTGCAGAGATGTGCTCACGGGAGAAGGTAACCACAATG21.4285714285714286No Hit
GGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGC21.4285714285714286Clontech Universal Primer Mix Long (96% over 25bp)
AAGAACGGCCATGCACCACCACCCACGGAATCGAGAAAGAGCTATCAATC21.4285714285714286No Hit
CACGGCGGCAATATCGACAACAAGGAACTTGTCGCAGGGTCGCGGCTGTT21.4285714285714286No Hit
AGCACATCCTCCCACTCTCCCGGAATCAAAAATACCAGCCACCATTCAGG21.4285714285714286No Hit
ACAGGCCTCCACCTTGTTTCATGTCTTTGTGAACATGACCTGTAGCCACA21.4285714285714286No Hit
TATCAGCAGTCACCAAGCATAATTTAACTTCTTCCTTTCCAATTTGGATG21.4285714285714286No Hit
GTCTCAGGACGTGTGTATGTCGGGGCTGGGTGCTGAAGATTCAAGTAAAC21.4285714285714286No Hit
CGCCTGGATACCGCAGCTAGGAATAATGGAATAGGACCGCGGTTCTATTT21.4285714285714286No Hit
TTTCACATTTTTATGTTGCAGAGTACCTCAGCAATTGCTAATGTTCTTAG21.4285714285714286No Hit
ACGCAGAGTACATGGAGAAAAACGGAATTATCGAATGGAATCGAATAGAA21.4285714285714286No Hit
GTCTCAACGGTCGGCATCAGGATCTTGCGGAAATCGTCGTGAATCGACGG10.7142857142857143No Hit
AAAGTGTTGTGATTACAGGCATGAGCCACTGCACCCAGCCTGGAAAGGCC10.7142857142857143No Hit
GAGTACGACCTCGCCAAAGAGATAAACGGGCAGGCAGTAGCCACCGAGAT10.7142857142857143No Hit
AATCCAGACCAGGTAAATACATACTTTTGCTTTTAATAAAGGTCTTTAAT10.7142857142857143No Hit
GTTTTAAATATACACAAATTCAGAAATCTGTGGAGCTTCCAAACACCTGA10.7142857142857143No Hit
CCGTACTGCAGACCGATGGACACGGAGATGGAGAGGGCATCCATGACTCC10.7142857142857143No Hit
CATGGGAAGCAGTGGTAACAAAAAAAAAAAAAAAAAAAAAAAAAATAAAA10.7142857142857143No Hit
TGGGAAGACAGAACATAGCATGTGTCTGAAGGCCTTTCGAAGGAATTCTA10.7142857142857143No Hit
AAATGAAAATGTTACACTACATTAATCCTGGAATAAAAGAAGCCGAAATA10.7142857142857143No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGTTTTCCCAGG10.7142857142857143No Hit
TTCCTGTTTAGTGTATGAAGAACATTTTGCTTTTTCATTTGTTTTCAAAG10.7142857142857143No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT10.7142857142857143No Hit
CGCAAAAAAAAAAAAAAAAAACAAAAAAAAAAAAGTAAGAGGGGTTGATA10.7142857142857143No Hit
TATCAGCAGTCACCAAGCCTAATTTAACTTCTTCCTTTCCAATTTGGATG10.7142857142857143No Hit
CAGCAGAACAGGCCAAGACATATTGCTTGTTCCATTTTTCTTCATTTCAT10.7142857142857143No Hit
CAGTGGTATCAACGCAGCGTACATGGGAAGCAGTGGTATCAACGCAGAGT10.7142857142857143Clontech Universal Primer Mix Long (96% over 26bp)
GAGCTATGGAGTCCCATCCAGCAGGTTACAGCCACATCCTCTAAATGGGC10.7142857142857143No Hit
AGAAAATGTTAACAGAATGAAAATGGGAACATGATATGGAAAAATTTGTG10.7142857142857143No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCGGCTTTGAT10.7142857142857143Clontech Universal Primer Mix Long (96% over 26bp)
CCTAGGAGGAGCATGTACCCTCTAACATGTGCACAGAAGGATAATAGGGT10.7142857142857143No Hit
GAGTACATGGGAAGAAGAGGAGGTTGTGCTAAAGGAAAAGGAGGATCGAT10.7142857142857143No Hit
GTGATGGTTAAGAACGAGGACAGTCTGGTCTTTGTCCAGACAGACAAATC10.7142857142857143No Hit
TTGGGAGCGGGCGGGCGGTCCGCCGCGAGGCGAGCCACCGCCCGTCCCCG10.7142857142857143No Hit
GAGTTACTTCACCCCCGCGTGCTGCTGGTTAATGTCCCGCGTCTCTGCAC10.7142857142857143No Hit
AATTAAAGAATTTGAGGTTATAACAACTAAAAAAATCTTTTTGGAAAATA10.7142857142857143No Hit
CTCGTGGAGTAGGGAACAATGGGAAGGTCAGTTGGGGCAGGGGGGGTTCT10.7142857142857143No Hit
CTCTGTTGGGGGACAGAGGAACCTGGGGAGTCCATCGCATGTCCTACAAT10.7142857142857143No Hit
TCCATCCAGTTGCTGATGCTTTGTCTTCAGAGAATTTACCCTTAACCAAG10.7142857142857143No Hit
TTCCTGCTGAGACAAGAAGCCACTTCAGAAATCTCTCAACAGCCCCAGTC10.7142857142857143No Hit
TCCCAGCTCTACAGCCTCTCTGGCTGCAGCCGTACACAGCAGCCTGCCCC10.7142857142857143No Hit
TGGCAACAACACAACATCAGTAGGGTAAAACTAACCTGTCTCACGACGGT10.7142857142857143No Hit
TGGCAACAACACAACATCAGTAGGGTAAAACTAAACTGTCTCACGACGGT10.7142857142857143No Hit
GCAGCAGGGAAGGGTGGCTGGCTGGCTCCCTGGCATCAGTGGGTTGGTTT10.7142857142857143No Hit
GTGCAGTTGAAGCTTCCGAGCTTGTTCGGCTGCACAAAGCCTACAAGAAT10.7142857142857143No Hit
GTATCAACGCAGAGTACTTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTGG10.7142857142857143No Hit
ACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATACCACTG10.7142857142857143Clontech Universal Primer Mix Long (96% over 26bp)
ACCTAAATGGTTTTTCTTATCCCCTATTTTCAGAAGAGAAAAAACAGAAA10.7142857142857143No Hit
TACCACTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTAC10.7142857142857143Clontech Universal Primer Mix Long (96% over 26bp)
GTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTAC10.7142857142857143Clontech SMARTer II A Oligonucleotide (100% over 25bp)
AGGTGAGATGAAGGAGACTTGGACTAAAATAGCGTGGAGATGGACAACAG10.7142857142857143No Hit
GGCGTGAGGGGTATCCCATAATCTGGACGGAACCATAACTCTGATAACGT10.7142857142857143No Hit
CTCTGGAGGAGTACTGGCAACAGACCTGCCTAGAGCTGGAACGTTACCTC10.7142857142857143No Hit
CGGCCACCATCCGCAGCGCTTCCAGCACCAGATGTATCGCGAGCGGTTCC10.7142857142857143No Hit
GTGGTATCAACGCAGAGTACATGGGAGCAGTGGTATCAACGCAGAGTACT10.7142857142857143Clontech SMART CDS Primer II A (96% over 26bp)
GGAAAAAGTATCAACGCAGAGTACTTTTTTTTTTTTTCCACAATTCAAGA10.7142857142857143No Hit
TATCAGCAGTCACCAAGCATAATTTAACATCTTCCTTTCCAATTTGGATG10.7142857142857143No Hit
GGCCAGGAAGGCCTTGAGCTTGGGCCGGGCGCTGAGGCGCCCCACATATG10.7142857142857143No Hit
CGTTTAGCTTCTCTCGCAGTTTAGTGGGGGTAAGTCCAGGCTGTAGCTTC10.7142857142857143No Hit
GTCCACGCTGCACAGGCGCTTGCGCCGCTTCATGGCCATATCAAAGGCCA10.7142857142857143No Hit
GCATATGATGTGAACTGGTGTCTTACATAAATTTTATAAAACTGGAAATA10.7142857142857143No Hit
GGATGATGCTGGCCTCATAAAATGAGTTAGGGAGGATTCCCTCTTTTTCT10.7142857142857143No Hit
CCATTGGAGGGCAAGTCTGGTGCCAGCAGCCGCGGTAATTCCAGCTCCAA10.7142857142857143No Hit
CTGCCTCCCCAGTTCAAGTGATTCTACCGCCTCAGCCTGCCAAGTAGCTG10.7142857142857143No Hit
TCCCAGCTCTACAGCATCTCAGGCTGCAGCCGTACACAGCAGCCTGCCCC10.7142857142857143No Hit
GTCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTTGTGG10.7142857142857143No Hit
GGGTGCAGCCACACCAGGACTGTGTTGAAGGGTGTTTTTTTTCTTTTAAA10.7142857142857143No Hit
GAGTTAAGATTATTTTTTAAATCCTGAGGACTAGCATTAATTGACAGCTG10.7142857142857143No Hit
AGCTGGGACTACAGGCACATGCCAGCATGCCTGAGACAGGGTTTCACCAT10.7142857142857143No Hit
GCCAGTGCTGGAGCTTCCATCGCCTAGGTCGCGGGGCCCGCACGGGGGCA10.7142857142857143No Hit
CCCATTTCCTTATTATCTAGTATTAGTTTGCTACGGGAGCCCAAACTCTT10.7142857142857143No Hit
GTACATGGGAAGCAGTGGTATCAACGCACAGTACATGGGAATGCAGTGGT10.7142857142857143Clontech SMARTer II A Oligonucleotide (96% over 25bp)
TATCAACGCAGAGTACTTTTTTTTTTTATTTTTTTTTTTTTATTTTTTTT10.7142857142857143No Hit
AGAATACACCATGGGCACTGTTCACACTGCACTGCTCAGCTTAGCACACT10.7142857142857143No Hit
CCACAGGGAATGAAATCAGACGCCTGATGAATTAAGTCTCCTCATACTTC10.7142857142857143No Hit
GATGTCTATACATTTATTTAGGTCTTCTGTGATTTCTTTTAACATTGTTT10.7142857142857143No Hit
ATCTAGCTCTGTCACCCAGGATGGAGTGCAGTGGCATGATCTTGGCTCAC10.7142857142857143No Hit
GTGAAACCCTGTCTCTACTAAAAATACAAAAAATTAGCCAGGCGTGGTGG10.7142857142857143No Hit
ACACAGCCCCCTACACAATGGTAAATACACACATTTGCATACACAGGAAA10.7142857142857143No Hit
CACTGGGGAAGTGACCACAGGATGAATCTAGGGACCCACTGTAAGCCAGA10.7142857142857143No Hit
GCCACACAAATACTGGCTGCTCCTTGATGGCCAGGCAGACCCAGCAGCAG10.7142857142857143No Hit
GTTGTAGCATGTGTCAGAGTTCCCTTTTTTTTTAGGGCTAATATTCCATT10.7142857142857143No Hit
GGTAATCAACGAAAAAAAAAAAAAAAAAAAAAAAAAAAGTCAAATGAGGG10.7142857142857143No Hit
GCCCCCCACACTGCGGTAGCTGCGAGTGACCGTGACACTGGAGGCAGAAG10.7142857142857143No Hit
CCATCAAATTTATCCAGAACTTCTCTTTTTTGGCTAGGACCCATCAACTT10.7142857142857143No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT10.7142857142857143Clontech Universal Primer Mix Long (96% over 26bp)
GTACATGGGAAGCAGTGGTATCAACGCAGAGAACATGGGCAGCAGTGGTA10.7142857142857143Clontech SMARTer II A Oligonucleotide (96% over 25bp)
TTTTTTTTTTGCGTTGATACCAATGCTAAAAAAAAAAAAAAAAAAAAAAA10.7142857142857143No Hit
GGAAAAAGTATCAACGCAGAGTACTTTTTTTTTTTTTCCAGAATTCAAGA10.7142857142857143No Hit
GCACTAGATACAATTTGAAAATATCCAGCACCAGGTTAATTCCAATAATG10.7142857142857143No Hit
GTCAATCCTGTCCGTGTCCGGGCCGGGTGAGGTTTCCCGTGTTGAGTCAA10.7142857142857143No Hit
GTCTTATAGATCAAACTGGCTCTTAGACCAACTCCGCAAATTCTTTTTGA10.7142857142857143No Hit
TGACTATTGTGCCATTGAACACTAGAACTTATTCCTTGTAACTCTATTTT10.7142857142857143No Hit
GTTGATCACCCACGCTCTACAGATGAACAAATTGAGACCCAGAGATGCTA10.7142857142857143No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGGCAGTGGT10.7142857142857143Clontech SMARTer II A Oligonucleotide (100% over 25bp)
GCTGGATCTCTAGCTATGTCAACAAGCAGGGATTCTGGGTCTAAAACTCC10.7142857142857143No Hit
CAGTGGCGCAATCTCGGCTCACTGCAACCTCTGCCTCCCAAGTTCAAGTG10.7142857142857143No Hit
GCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAATTCTTGGACCGGCG10.7142857142857143No Hit
GGGCAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACG10.7142857142857143Clontech SMARTer II A Oligonucleotide (96% over 25bp)
GGATTGACAGATTGATAGCTCTTTCCTGTCCGTGTCCGGGCCGGGTGAGG10.7142857142857143No Hit
TACAATCACAGCTCACTGCAGCCTTAAACTCCTGAGCTAAAATGATCCTC10.7142857142857143No Hit
GTATGTATATGACCTCTTTTAAAAGTTTCCTGCTGCCAGTTGATTCCATT10.7142857142857143No Hit
CGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAATATGACTATGACTTTAAA10.7142857142857143No Hit
CCTCTACAGAGCCCCAAGGGCCTCGGCCGGTCCTGGGCCGTGAGAGTGTC10.7142857142857143No Hit
ATGCACTCGATGCATTGATGAAACTGCTGCGCGTGTTAGCCCGCCACCAG10.7142857142857143No Hit

[OK]Adapter Content

Adapter graph