FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003631904

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003631904
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences37
Sequences flagged as poor quality0
Sequence length100
%GC51

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TATCAACGCAGAGTACATGGGGAATAATTGCAATCCCCGATCCCCATCAC25.405405405405405No Hit
GCCATGGAAGAAATGTTAAGGCATTCAGGAGTGTGGCAGCCCCTGGCAGC25.405405405405405No Hit
GTTTTAAGCAGGAGGTGTCAGAAAAGTTACCACAGGGATAACTGGCTTGT25.405405405405405No Hit
GTGCTAGCCCGTCGAGACTGAAAAGCTATAACCCGCAGACCCGAGCGAAA25.405405405405405No Hit
GACGAACCCGTGCAGGTCGAACTCCGTCATCTCCAGCTGCAAGCGGCCGC25.405405405405405No Hit
CCCAGCAGCCCTGGCTTTTCCGTGCTTACCTGCAGCGCCTTCTCCTTCTA25.405405405405405No Hit
GTGTTTAACAGCGAAACTCTCGTCTTCAAAAAATCCTCCATAGATAGATT12.7027027027027026No Hit
GTTTTGTTGATTTAACTGTTGAGGTTTAGGGCTAAGCATAGTGGGGTATC12.7027027027027026No Hit
ATATAAATGCGTAGGGGTTTTAGTTAAATGTCCTTTGAAGTATACTTGAG12.7027027027027026No Hit
GAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATGCCTTC12.7027027027027026No Hit
GTAATATACAATACAAAGCAATTTCCTCAGAAATCTGAGAAGCACCAAAC12.7027027027027026No Hit
GGTTGCGGAAGAGCTGACGTAGGTAAGAGTAGTCGGGCTTGTCGTCAAAC12.7027027027027026No Hit
GGTATCAACGCAGAGTACATGGGAATAACGCCGCCGCATCGCCGGTCGGC12.7027027027027026No Hit
GTAGTAGACCAACCATCTGTGCTTATTTCTTCTAAACAGAGCTGGGAATG12.7027027027027026No Hit
ATAGAAGATCTAGAAACAACGGAGTGAAGAAACTTGGTGGTACATTCACA12.7027027027027026No Hit
AGGGAGGACATTTTCTGCAGTTGCCGAACCAGTAGCAACCAGGTCCTGAG12.7027027027027026No Hit
CTGCCGTATCGTTCCGCCTGGGCGGGATTCTGACTTAGAGGCGTTCAGTC12.7027027027027026No Hit
CTGGAACAGGACTTCCCTGCCCCAGTGATGACAGTTAAAGATGGCAAAAA12.7027027027027026No Hit
AAGTGAAGATGATTGACCGCACGCAATTGATATTAGATATTTTTGCAAAG12.7027027027027026No Hit
GGCACTGGACCACGCGGGACGGCCCCGCCACGTGTTCTCCTGCACGAGTG12.7027027027027026No Hit
ATCCTGGCTAACACAGTGAAACCCCGTCTCTACTAAAAGTACAAAAAATT12.7027027027027026No Hit
GTCTTACTCTGTCGCCCCGGCTGGAGTACAATGGCACAATCTCGGCTCAC12.7027027027027026No Hit
GCCTAAAAGATATCCTTTCTCTTGTGCTGGCTCAGGAATTTATTATTAAC12.7027027027027026No Hit
TCCTGACCTAAGACATTGAGTGGAGAGTCCTAACCCTTTGGAAGTTGAAC12.7027027027027026No Hit
GAGTATGGTTGCAAAGCTGAAACTTAAAGGAATTGACGGAAGGGCACCAC12.7027027027027026No Hit
GCATGCAGCCCGTCCATCCCGCCGCGCAGGTTGACCAGCACGAGCAGCGG12.7027027027027026No Hit
ACCTAGTCTGGGTTAAAATGGATTTGTTATGGAATATTAACTCACTGGCC12.7027027027027026No Hit
GCTAGGAATAATGGAATAGGAACGCGGTTCTATTTTGTTGGTTTTCGGAA12.7027027027027026No Hit
AACATCGATATAATAGCCTGACGCGGTGCGAAGATACTTGCCGGCGATGC12.7027027027027026No Hit
GTTTATGGTCGGAACTACGACGGTATCTGATCGTCTTCGAACCTCCGACT12.7027027027027026No Hit
GGGCACCACCAGGAGTGGAGCCTGCGGCTTAATTTGACTCAACACGGGAA12.7027027027027026No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)