FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003631936

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003631936
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences65
Sequences flagged as poor quality0
Sequence length100
%GC62

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTGCTCCGGTGTCATGCCTTGCCAAGTCCCGTTCTTGATGAACACCTGCT34.615384615384616No Hit
GTGATCATCCGCCTGGCGCCGCTGGGCGTGCTGGGCGCGGTGGCCTTTAC23.076923076923077No Hit
CCCAATGCCTTGGCAACATCCCAGAACACCGGCGTTGTGCGGGCGTCTTC23.076923076923077No Hit
CTGGTCGTCAATGCACCCACGTTGGCGCTCACCCCGGCATCGGGCAGTCT23.076923076923077No Hit
CTCGAAGAAGGCGCCGAGAAGCTCGAAGACGCGATCATCAAGGCGACCAA23.076923076923077No Hit
CTGCTGCAAAGGCCGTTTGGCTTCGTCGCCCAGCTCGGCGTGATCGCGCT23.076923076923077No Hit
CCCTACAAGAAGTTCCGCGACCTTGCGGGCAAGCGCATCGCCATCCCGAG23.076923076923077No Hit
TGCTGTAGCCGACCGTCTCCATGGCCCAGACGCAAAGCGAACGGGTGGAC23.076923076923077No Hit
ATCGTATTCGGCATCGTGCTGGTGCTGGTGCTGCGCTTTGCGCCCGAGGG23.076923076923077No Hit
GAACACCACCCCGGAACAGATGAAGATGTTCCTCACGCGGATCGGCTTCG23.076923076923077No Hit
AAACTGATCCCGCGCACTCATAACGACTACTACTACAGCGTGCGTCGTAG11.5384615384615385No Hit
ACCAGGCAAGATATCTCCAACAGTCCCAAACTGCCCCTGTATCTGCGTAT11.5384615384615385No Hit
CCTCTCATCTCATCAAAGTCATTCTCCATCCAGCTTTATTCCATTGCTGG11.5384615384615385No Hit
CTTCTCATACAGGTTGGTGAGTTCGGCCTCATCGAGCTTCGCGCCTGGCA11.5384615384615385No Hit
CCACCACCACGAAGCCGAACAACCTGCACGCATCATCACCAAAGTGGGCG11.5384615384615385No Hit
CTCAAGCACTGGGCCGCGCGTCCCGAGATCCAGGCCGTGGCCGTGCTCGG11.5384615384615385No Hit
GTCAAAGCGCAGCGCGTCGTTCACTTCATAGAAGTGGTAGTGCGAGCCGA11.5384615384615385No Hit
GGCCTGGCGCGCCAGCACGGTGTCGAGCATCAGCGGTGCTGCTGCGTGCG11.5384615384615385No Hit
GAATAAACATGCTGAAAACTAAGCGCAGGAAGTACCGCAAGTAGAAGAAG11.5384615384615385No Hit
CGTTAATCTTGTTGCTCCTGTAACCGTTGGCAAAAACGCTTTCGTTGCAG11.5384615384615385No Hit
CCGCCCTGGCGACCGTTTCTCCTTTGCGCTCGACGGCGCCGCGCCCAAGC11.5384615384615385No Hit
ACGGACTCTCGAGAAGGCTTTGGGCCATCAGATACGTTTACTCCGGCGTG11.5384615384615385No Hit
AAGAAAGTAAGCAAAGAAAGGCGCGCCCGATGCGGCGACCCCTCCTTGAA11.5384615384615385No Hit
GTGTGCTTCATCGGGCGGGGGGATCGATCGTGTCGAAGCAGGCATTCTGC11.5384615384615385No Hit
CTCCATGATGCGCTTGCCGGTCGTCGTACCGCCGGTGAAGGACACCACCC11.5384615384615385No Hit
ACCATAGGCTCCTCGGGGCCCAGTGAAATGGAGCTTGGTCTGTCTCAGTC11.5384615384615385No Hit
TTCATGAAGTCGATCAACGTTGAAGTCGGAGGGCTTGTATCGAGCCTGAG11.5384615384615385No Hit
GAGGAACTGATCGCGCGCCTCGCGCAGAAGGCCCGTGCGGCCGGCATCCA11.5384615384615385No Hit
CCGGTGTCCGTGCAGATCGACCTGTTCTGAATCAACTGATCGCAGACTTG11.5384615384615385No Hit
GGGCAATGCGGCCCGCAAAGTCGTTCTGGAAAAACGTCAGGCTCTGCTTG11.5384615384615385No Hit
GATCACCATCGTCACAGACGTGGTGCGCGAGAACAACCAGACTTACCGCC11.5384615384615385No Hit
GTCGAGGCCACGCAGGCGCCCGAGCTGGCGCGGCGCGCTGTTCGCGAGTC11.5384615384615385No Hit
GAACTACGACATTAGCAGGATCATGCTGCCCACTCAACGAATGTCTGCAA11.5384615384615385No Hit
CCTGGACACCGAATAGCTCCAGCCGATCGCAGTAGCCCGCGACTCAGTGG11.5384615384615385No Hit
GTCAAAAACGTGCCTCCTGTCATGGTCGACCTATGGCTTTGGCTGTCAAA11.5384615384615385No Hit
GTGTCGGGAAGCCCGGCCGACCGCGCCGGGATCCGTGCGGAGGACATGAT11.5384615384615385No Hit
GTGCTCGACATGCTGGTTCAGCCACAGCTCGAGCGCCGGCTTCACATAGG11.5384615384615385No Hit
CTCCGCAACACCCGCATGCAGAATCCGCCCGTCTCCATTGCCATGTGCTG11.5384615384615385No Hit
GCGCCACGATGATCTGGTTGGCCAACTTGCAGGTCTGCCCGGCACCGGAG11.5384615384615385No Hit
ATCAGCGACACGCCGGTGCTGCCGATCGACGAGGTGCAGACCGCGTTCTA11.5384615384615385No Hit
ACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAAGAGATGGAGACCA11.5384615384615385No Hit
TCCCCCATGCGGCGCATCAGCGCGCGCGTCACGAGCGCACCGGCGGCAAT11.5384615384615385No Hit
AACTGGATCCGGCCGAGATCGTCGATCCGCTCGATCGTGGCCGAGAGCAG11.5384615384615385No Hit
CCCGGACCTTGCCCGCGCCGACGATCGGTTCGAGCAGGCTTTCCACCTGC11.5384615384615385No Hit
GGACCTGGGTGTCTCGGGAGATGCCGTTGATGTCGGCGAGTTCAGCCATG11.5384615384615385No Hit
GGGGCGAGCGTGACCCCGGCGTAGTCACCCGCCGCACCATCGGCGCGTTG11.5384615384615385No Hit
TCTTTTACTAGCGACCATATTCTCGCGGCGATCCTGTTCGAGATGACGAT11.5384615384615385No Hit
CCACAGTGGACAACTGACATGAATCGCCGCCATCTGTCGATCGCCGCCGC11.5384615384615385No Hit
GAAGGGCACGATGTAAGAGCCGTCCTTCGACGGGCCGACCTCCGCGTCAT11.5384615384615385No Hit
CAACACCACCCCGGAACAGAAGAAGATTTACCTCACTCGTATCGGCTACG11.5384615384615385No Hit
AGCCGGACGTGACCGTCCACCAGAGCCCCGTGGCGGCGGACCTGGTGGTG11.5384615384615385No Hit
GGAACAGGCACGCGACATGCTGGCCGGCGTAGCCGCGCAGTACGAGCGTG11.5384615384615385No Hit
GAATAAACATGCTGCAACCTAAGCGCAGGAAGTACCGCAAGGAGCAGAAG11.5384615384615385No Hit
CCCCCGCACGGCCATATCGATGACTACTTCCGCAACCTGCTGGCCCAGCG11.5384615384615385No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)