FastQCFastQC Report
Tue 10 May 2022
EGAF00003632589

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003632589
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1616823
Sequences flagged as poor quality0
Sequence length100
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTTATACCAGCGTTATGAGATCAAGATGACCAAGATGTATAAAGGGTTC24930.15419127511174693No Hit
GTACATGGGTACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAG22680.14027509504750982No Hit
GGGTGGACACTGTGCAGGCTTCAGCTTCCACTCCGGGCAGGATTCAGGCT19890.12301903176785585No Hit
GTATAAAGGGTTCCAAGCCTTAGGGGATGCCGCTGACATCCGGTTCGTCT19820.12258608394363514No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT16420.10155718962434354No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)