FastQCFastQC Report
Fri 10 May 2024
EGAF00003634101

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003634101
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences80
Total Bases8 kbp
Sequences flagged as poor quality0
Sequence length100
%GC49

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCGATCGCACGCCCCCCGTGGCGGCGACGACCCATTCGAACGTCTGCC33.75No Hit
GCCCAAGTGAATTACTTCTGCTGACTCCTGCACAGTCGCTGCTGCTATCC33.75No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA33.75Clontech SMARTer II A Oligonucleotide (100% over 25bp)
GTCTGGAGGCAAAATTCCCTCTTTTTGGAAGCAGGTCAGTCTTTTCTCTT22.5No Hit
CATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATAC22.5Clontech Universal Primer Mix Long (96% over 26bp)
CCCAAGATCCAACTACGAGCTTTTTAACTGCAGCAACTTTAATATACGCT22.5No Hit
TTATTTCCCTGCTGGAAATCAGAGATAGAAACAAATGAAGCATCAGGTTG22.5No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGTT22.5No Hit
CAGCACCCCTCCCCCACAGGATGAAATGCTCGGGCCAGGGATGGGGCCCA22.5No Hit
AGCCACAACCACTCCCAACATTGACCCTTCTGGGGGTAGCTGTCTGTGGC22.5No Hit
CGTTCATAGCGACGTCGCTTTTTTGATCCTTCGATGTCGGCTCTTCCTAT22.5No Hit
GCTTCTGACCCTTTGCCCGGGGCGTTTCCTTTCCCGTTGGGGCTTCCACT22.5No Hit
AAAAGGTACCTAACCAGACTGGAAGAGACATCGCACTATGTCGATCGCAA11.25No Hit
ATCCAACTACGAGCTTTTTAACTGCAGCAACTTTAATATACGCTATTGGA11.25No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT11.25No Hit
GCACAAGAGGCTGCCATCAAGATGAGGGTGAGGGCCAGAGGGCACAGCCA11.25No Hit
GTCTTGCAGTAGTGCGGTCAAGCGCGAAGCTGGGGTGCTCAAGCGATCTG11.25No Hit
GAACACTACCTGGCCTTCTAACCTCATGGAGAGCCTGACCAGGCCTGCCA11.25No Hit
GTTTAGCGCCAGGTTCCCCACGAACGTGCGGTGCGTGACGGGCGAGGGGG11.25No Hit
GAAGCAGTGGTATCAACGCAAAAAAAAAAAAAAAAGAAAAAAAATTACCG11.25Clontech SMARTer II A Oligonucleotide (95% over 21bp)
GTCACGATCCGGGGCCAGGTGAAGCGCTCACCGACGCGCTACGAGAAGGA11.25No Hit
TTGCAACCATACTCCCCCCGGAACCCAAAGACTTTGGTTTCCCGGAAGCT11.25No Hit
CGGCCGGTACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATGGTTCC11.25No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCTGTCTCTTATACACATC11.25Clontech Universal Primer Mix Long (96% over 26bp)
TATTTATATCATTCTTAAAAGCCTCTATCATCTTCATGAAATGAGATTTT11.25No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGCTGTCTCTTATACA11.25Clontech Universal Primer Mix Long (96% over 26bp)
GGGTAGGCACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCAGCCCCGGAC11.25No Hit
GCCTGCTACCGCTCATTCGCGTGGCGGGACGCCTGCGAGGACCTCGGTAT11.25No Hit
GACCTGTTATTGCTCAATCTCGGGTGGCTGAACGCCACTTGTCCCTCTAA11.25No Hit
GACGGGCGCTGACCCCCTTCGCGGGGGGGATGCGTGCATTTATCAGATCA11.25No Hit
TTCCTGAGATTAGGGGTGAAAGAAAACCCATATATAATGACTGATAGAAA11.25No Hit
GAGTACATGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGT11.25Clontech SMARTer II A Oligonucleotide (100% over 25bp)
CAACCCGCACAGGGCCCACTCGTTGGAACCCTCAACCTACCTTCGGACCC11.25No Hit
CACTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCT11.25Clontech Universal Primer Mix Long (96% over 26bp)
GGTATCAACGCAGAGTACATGGGGCAGTGGTATCAACGCAAAAAAAAAAA11.25No Hit
ATACACATCTCCGAGCCCACGAGACTTATGTAAAGGGATCTCGTATGCCG11.25No Hit
GACCATACATGAATATGTGCCTAAGAAAGAAGAAAAAGCAATATTCATTT11.25No Hit
TCATCATGGTGAACAGCCCGGTAGCGACGAGGGTCGCCGCGGGTAAGGGA11.25No Hit
GTTCTGCGCCGCATTCGGGAGTCTTTCTTTCGCGTGGTGCCGCAGTTTGT11.25No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT11.25Clontech Universal Primer Mix Long (96% over 26bp)
GCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATACCTGTCTCTTA11.25Clontech Universal Primer Mix Long (95% over 21bp)
GAAGCAGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAGTAACTG11.25Clontech SMARTer II A Oligonucleotide (95% over 21bp)
GGCTAAGGGTGCCTCCAGTCCCAATAGCCACAAGTGAATTCTGTTGAAAG11.25No Hit
CTCTTATACACATCTCCGAGCCCACGAGACTTATGTAAAGGGATCTCGGA11.25No Hit
GCCCTCCAATGGATCCTCGTTAAAGGATTTAAAGTGGACTCATTCCAATT11.25No Hit
CGGTGGCAGAAGTACGTGCGGCAGCCGAACGGCCGCGACTCGTACACCGT11.25No Hit
CTTTTCTAAAGTGTATTTTCTGATGTGAACTTCCTTCCCCTTACTTGCTA11.25No Hit
GTACTCCTCGCTCCATGGCTGGGCGGGGATTTGGTGCAGACCGGGCATGG11.25No Hit
CAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGTTTTTA11.25No Hit
AGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGT11.25Clontech SMARTer II A Oligonucleotide (100% over 25bp)
GTGCTGTTCGGTTAAGCGTTTATGGGCATTAAAATAAATGAATATGATCT11.25No Hit
GCAGGGGCTGCTGCCCGGGCGCTCGGACATCTCCGGCATCGTCCGCCAGG11.25No Hit
ATCAGATACCGTCGGAACTACGACGGTATCTGATCGTCTTCGAACCTCCG11.25No Hit
ACTCTGCGTTGATACCACTGCTTCCCATGTACCTGTCTCTTATACACATC11.25Clontech Universal Primer Mix Long (96% over 26bp)
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAATTATTTATA11.25No Hit
GTACATGGGAAGCAGTGGTATCAACGCAAAAAAAAAAAAAAAAAGTACTC11.25Clontech Universal Primer Mix Long (95% over 21bp)
AACCAGGAGCCGGTGCTGGGCTCCGACCTAGCCGCGATGGCGGAACGGGC11.25No Hit
ACATTAGGCTAAAATTGTAGTCTACACCTTCTTTTAAGATTAGTTGGCTT11.25No Hit
ATGTTGGCGAGGCTGGTCTCGAACTCCTGACCTCAAGGATCCTCCTGCCT11.25No Hit
GTGGGATTATGACTGAACGCCTCTAAGTCAGAATCCCGCCCAGGCGGAAC11.25No Hit
GCTTCCCATGTACTCTGCGTTGATACCACTGCTTTCCCATGTACTCTGCG11.25Clontech Universal Primer Mix Long (96% over 27bp)
GCCGACGGCTACGTCGATGGTCGGTGCAGGTGATGACCTGTCTCTTATAC11.25No Hit
TCCCAGCACTTGTAGCTGAGGTAGTACTGCCTGTAGCCACTAATGATGGC11.25No Hit
GCAGAGAGCATTCCATCTGGAAGTTGTGGACTTTTCTAGTGAGAGCCTCA11.25No Hit
AGCGTATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGTTGGTTCGTGGG11.25No Hit

[FAIL]Adapter Content

Adapter graph