FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003634102

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003634102
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences80
Sequences flagged as poor quality0
Sequence length100
%GC53

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTACTCCAGCAATCCAAACGCATTTTATCTCACTAGTCCAAACGTCAGTA33.75No Hit
GCTATACGAGAGAATCCAGTCTATGAAAAGAAGCCCAAGAAAGAAGTTAA33.75No Hit
TTCCAATTACAGGGCCTCGAAAGAGTCCTGTATTGTTATTTTTCGTCACT33.75No Hit
GGGCACGGCAATGATCTTTACCTGCTTCACCCTCAGTGCACTCTATGCCA22.5No Hit
GCTGTGGGACTCCTGTGCGTGCCTCGGACTGCGTGTGTCGGCGGGACGCA22.5No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG22.5No Hit
CCTAGGTACTAGGTCACCACTGTTTCTTAATTATCCACGAAGCTGGGAAA22.5No Hit
ACATGAGAGTGTCTCGTACATGATGCATAATAATCCAGTTGAAGAATGTT22.5No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT22.5Clontech Universal Primer Mix Long (96% over 26bp)
GTCTTGAGGCTCTCACTAGAAAAGTCCACAACTTCCAGATGGAATGCTCT22.5No Hit
GTAACAACACATCATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCT22.5No Hit
GTACTTTTTTTTCTTTTTTTTTTTTTTTTGCGTTTAAACCAATGCTTCCT11.25No Hit
GACGGACCAGAGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCAAGAA11.25No Hit
GGAAGCAGTGGTATCAACGCAGAGTACATGGGCTGTCTCTTATACACATC11.25Clontech Universal Primer Mix Long (96% over 25bp)
GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCCTGTCTCTTA11.25No Hit
GCCTGGCCCTGAGTGAGCACCTGGTTACCACTGCCCCCTTCTCCATCGGC11.25No Hit
AAGCAGCTCCAAGTGCAAAAGTAAATATTTGTGCAAAAAGGCACACTGCC11.25No Hit
TGCCCAGGGGCTGGGATGCCCACACCACCTGCCAGGCCCTCGGGGTGTGT11.25No Hit
GTTCCACACCGGGGTTGGCAGTGTCGAATCCAGCGATGTGCATACCGTGA11.25No Hit
GGATCGGGTTCTAAAGGAAAGGGTGGAGAGATTCAACCAGTTAGCGTGAA11.25No Hit
GGACAGGATTGACAGATTGATAGCTCTTTCTCGATTCCGTGGGTGGTGGT11.25No Hit
CTCCGGCCCCGGCCGGGGGGCGGCGCCGGCGGCTTTGGTGACTCTAGATA11.25No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTCTGTCTCTTATACACATC11.25Clontech Universal Primer Mix Long (100% over 23bp)
GCCCAGGACCAGGATGAAGAACAAGGTGGTGAGCGCCCCCACCGCCGAGC11.25No Hit
GTCCAGTGACTCGTCGGTGAGCAGGGGATTCTTATATGTCGGCCTGAGCC11.25No Hit
GGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACG11.25Clontech Universal Primer Mix Long (96% over 26bp)
GTCATCACCTGCACCGACCATCGACGTAGCCGTCGGCCTGTCTCTTATAC11.25No Hit
GCAGTGGTATCAACGCAGAGTAAATGGGAAGAAGTGGTATCAAAGCAGAG11.25Clontech SMARTer II A Oligonucleotide (95% over 22bp)
GGGTGGAGGGAGAATATTAACTGCAACAAAACTGCATTAACTGGTCACAA11.25No Hit
GAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGG11.25Clontech Universal Primer Mix Long (96% over 26bp)
CCCCGTCACCCGTGGTCACCATGGTAGGCACGGCGACTACCATCGAAAGT11.25No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA11.25No Hit
CTCTTTCGAGGCCCTGTAATTGGAATGAGTCCACTTTAAATCCTTTAACG11.25No Hit
GCGCTGCACGGTGTACGAGTCGCGGCCGTTCGGCTGCCGCACGTACTTCT11.25No Hit
TCCAAGGAAGGCAGCAGGCGCGCAAATTACCCACTCCCGACCCGGGGAGG11.25No Hit
GGAGGGCGCGTGCCCCGCCGCGCGCCGGGACCGGGGTCCGGTGCGGAGTG11.25No Hit
ACGCAGAGTACATGGGGAACTTGGAGGCAGAGACCCAAGCACCTGGAGGC11.25No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA11.25Clontech SMARTer II A Oligonucleotide (100% over 25bp)
CGGATAGCCGGTCCCCCGAGGCCAACCGAGGCTCCGCGGCGCTGCCGTAT11.25No Hit
GCCGGACAATCACAATTGATAGAAACCAGATTGGAGCGCCTTCAATTGAA11.25No Hit
GTCCACACACTCTCTGGCTCTTCATAGTAAGCATTAGTGAACTGCCCTCG11.25No Hit
TGCTCGCTCCGTTCGGAAAGTGTCGCGTATCGCAGTACTCCGACGTTTTG11.25No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTGCGTTTATAACACTGCATACGG11.25No Hit
ATACACTTCAGCACCACCAGAACCCAGTTCTCTCACCACAGCAAGCTCTT11.25No Hit
CTCCGGCCCCGGCCGGGGGGCGGGCGCCGGCGGCTTTGGTGACTCTAGAT11.25No Hit
TCCCATGACCCGCCGGGCAGCTTCCGGGAAACCAAAGTCTTTGGGTTCCG11.25No Hit
CCATCGTGGATGAGCTTGAAGAGGAGCTTGAGAATGAGCTCGAGGATGCA11.25No Hit
GTACTTGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA11.25Clontech Universal Primer Mix Long (96% over 26bp)
GGCGGGTCGTCGGAGACGAAAGTGATCTTGCCCGCCCGTTCCGCCATCGC11.25No Hit
CATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGCTGTCTCTTATACA11.25Clontech Universal Primer Mix Long (96% over 26bp)
NTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGC11.25Clontech Universal Primer Mix Long (96% over 26bp)
GACATGGCTGGCTCCTGGTTGCTCATAATGGCGGAGATCCGGATGCAAAC11.25No Hit
GCTCGGTCTCTGATGAATAGAGACGCGCGTAGGCCCAGCCGTCCGCGAGA11.25No Hit
CATTTAGGTTCCACTAGTTAGTCAACATACTAAAATAACCAGTTCAACTA11.25No Hit
GCTTCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTT11.25Clontech Universal Primer Mix Long (96% over 26bp)
CGCGTCGAGATCGGCCTCGAGCGCCTGCTCGACCGCCGCGCGCGCCGATG11.25No Hit
GAGTACTTTTTTTTTTTTTTTTTGCGTTGATACCAATGCTTCCCATGTAC11.25No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGTTTTTAAAA11.25No Hit
GTCTTGGGGTAGAAGGACCCTCCAAAGTCACACAAAGTGCCTGCCTCCTG11.25No Hit
TGAGTCCACTTTAAATCCTTTAACGAGGATCCATTGGAGGGCAAGTCTGG11.25No Hit
GTATCTGATCGTCTTCGAAAGTCGGAGGTTCGAAGACGATCAGATACCGT11.25No Hit
GGGCAGACGTTCGAATGGGTCGTCGCCGCCACGGGGGGCGTGCGATCGGC11.25No Hit
CTTCAGATGGACTGGAAGCATCAGAAAATGAGAAAGAGGTATCCTGTAAG11.25No Hit
CTACAATGCAGACTCCTCTTCCAGAGAAAGGTCTTTCAGAGACAGGGAAC11.25No Hit
TGGGAAAGCAGTGGTATCAACGCAGAGTACATGGGAAAGCAGTGGTATCA11.25Clontech SMARTer II A Oligonucleotide (100% over 25bp)
GTGTGTGGAGATGTACACAGATGGGCAGTGGAATGACAGGAACTGCCTGT11.25No Hit

[FAIL]Adapter Content

Adapter graph