FastQCFastQC Report
Tue 10 May 2022
EGAF00003634348

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003634348
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1072660
Sequences flagged as poor quality0
Sequence length100
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG37550.35006432606790594No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT21890.20407211977700296No Hit
GTATATAAGCCTATGTATTTCAGTAATGCTGCTACAGGGGGATACAAAAT14710.13713571868066302No Hit
ATATAAGCCTATGTATTTCAGTAATGCTGCTACAGGGGGATACAAAATCA13250.12352469561650477No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT11650.10860850595715325No Hit
GTTTTATTATCATTCACATTATTTCATAGAAAAAGGAATATAGCAAACGG11630.10842205358641135No Hit
CTCTAAGCCTGTCCACGAGCTCAATAGGGAAGCCTGTGATGACTACAGAC11380.10609139895213769No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)