FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003634437

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003634437
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences46
Sequences flagged as poor quality0
Sequence length100
%GC49

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCTGAATCTACACTGGAAGCCAACTTGCTGGCACCCCCGCTCCCCAAC24.3478260869565215No Hit
CAATGGATCCTCGTTAAAGGATTTAAAGTGGACTCATTCCAATTACAGGG24.3478260869565215No Hit
GAAAATTGAGAGAAAGGACTACAGAGCCCCGAATTAATACCAATAGAAGG12.1739130434782608No Hit
AGCCAACATAACACTGAATGGGGAAAACTTGAAAGCATTCTCTCTGAGAA12.1739130434782608No Hit
GGTTAGTGCCAGACACATAACCAGCGCAGTTGACATCTGAGTCGTTACTG12.1739130434782608No Hit
CTTTTTTTGTTGTTTTTGTTGTTGTTTTGAGATGGAGTCTTGCTCTGTCA12.1739130434782608No Hit
CATTTGGTGTATGTGCTTGGCTGAGGAGCCCATGCGGAACGATACGGCAG12.1739130434782608No Hit
GCATAGTGGTTGTCTGGAGTTGGAACCAGGTAGCAAGAGTCCTGGGTAGT12.1739130434782608No Hit
CAATAGGATTGTAGCCCAGGATGAGTCCCTCAGCGTGACGCAGTAAACTA12.1739130434782608No Hit
CCCCGCCGAGACCACCACGGTGTGCCACCTAAACGTCGAGTGGGCCCCCG12.1739130434782608No Hit
GTCTCATACTTGACTCTAAAGTCATCAGCAGCACGACGGGCATTGTCAAT12.1739130434782608No Hit
GTTACTTAACTTCTGAGCCTATTTCTGCGCCTGTGAAGTGAGGACAGTAA12.1739130434782608No Hit
CCTGACAGATGCTCGCTTGAGTGAGGCCGCCGAGCGGTTACAAACACTGG12.1739130434782608No Hit
GACGGTATCTGATCGTCTTCGAACCTCCGACTTTCGTTCTTGATTAATGA12.1739130434782608No Hit
CATATATTCCCAGAATTGTACAACCAAAACCACAATTTTAGAACATTTCC12.1739130434782608No Hit
TCATTAGACTGCACGTCACAACTCTCAGGCTGGGAGCTCCCCCTCCTGTC12.1739130434782608No Hit
TTTCACTGGGGATGTGGCAGTCCCAGGTGAAGGCTGGCTAGGTCATAATT12.1739130434782608No Hit
CAATGGATCCTCGTTAAAGGATTTAAATTGGACTCATTCCAATTAAATGG12.1739130434782608No Hit
GAGCCAGCTCGTCATATTGGGCCCGGATGTCTGCCATGATCTTGGCGAGG12.1739130434782608No Hit
TCAAGAAGCTGAGAAATCCAAAATAAGATGAATTCAAAGACATTCACACC12.1739130434782608No Hit
GCTTTCCGTGACCAGAACATTCTCTTGGGTACAACTTACAGGATCATAGC12.1739130434782608No Hit
TTACAGGGCCTCGAAAGAGTCCTGTATTGTTATTTTTCGTCACTACCTCC12.1739130434782608No Hit
CCCTTGACCCCTGGCCATGCCCTGCGCGGCAGCGCACCGGGCGACGAACT12.1739130434782608No Hit
GCGGGTAACCCGTTGAACCCCATTCGTGATGGGGTTCAACGGGTTACCCG12.1739130434782608No Hit
CGGCTCTTCCTATCATTGTGAAGCAGAATTCACCAAGCGTTGGATTGTTC12.1739130434782608No Hit
CAATGGATCCTCGTTAATGGATGTAAAGTGGACTCATTCCAATTACAGGG12.1739130434782608No Hit
GCCCTGGATGGCTGGGGTCCGCCGGTCCCTGGGGGCGGCGCTTCAGCGAC12.1739130434782608No Hit
CGGCTGATGTGTGTGCGGATGAGGCCGGCCTTGAGCGTGTCGGCGGAGGG12.1739130434782608No Hit
TTGTAAGTATGCTTTGAGTCCAGGGGGAAGGATGTTTTGTAGTTTGGTTT12.1739130434782608No Hit
TGTGTATGCTTTTCTCTTCTTCATCTGTCTTTAGTTGTAGGGGGCTCAAC12.1739130434782608No Hit
GCAATACGCCTTGTTGCTAGATTCAAGAACAGCACTTAGCTGTTACGGTT12.1739130434782608No Hit
GCACTGATACAATCACAGCTCACTGCACTTCAGCCTGGGTGACAGAGACA12.1739130434782608No Hit
AATAAAGGAACAGAATCGAGAGTTACGAGGTACACCGAGGGCTATAATCA12.1739130434782608No Hit
GAATTACAGTGCGCTGAACAAAGCCGATCTGGCTTTGCAAAGTTTTTAGC12.1739130434782608No Hit
GGTTCGAAAGACAGCCAGTTACGTTAACTACAACTGGCGAGATGCATAGC12.1739130434782608No Hit
ATTAAGGCTACATTTACCCATTTATTTTTTTCCTATTGAAGGATACAACC12.1739130434782608No Hit
ATGTCTAGAAGAGTATTTCCTAGGTTTTCTACTAGGATTTTTACAGTTTT12.1739130434782608No Hit
CCCCATCTCTGCTAAAAATACAAACATTAGCTGAGAGGAAATGATGTGCA12.1739130434782608No Hit
CGACGCAGGTGCAGATCTTGGTGGTAGTAGCAAATATTCAAACGAGAACT12.1739130434782608No Hit
GTCCAGGGTCTCCCCCAGCACTGAGGAGCTCGCCTGCTGCCCTCTTGCGC12.1739130434782608No Hit
TCTGTGATGTGCATCACATTCTGGTTTAATGCTTAATAAAAGCGTTTTCT12.1739130434782608No Hit
ATTCTAGAGGCCTCCTTCTTGAGCTTGCCTTCTTTTGAACTTGGCCCTCA12.1739130434782608No Hit
GGCATACGCCACAACGCCCGGCTAATTTTTGTATTATTAGTAGAGACGGG12.1739130434782608No Hit
CCACAAACCCCAACCTCGACCATCAACTCACACGAAACACCATCAACCGC12.1739130434782608No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)