FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003634438

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003634438
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences46
Sequences flagged as poor quality0
Sequence length100
%GC50

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGGTGACCACGGGTGACGGGGAATCAGGGTTCGATTCCGGAGAGGGAGC36.521739130434782No Hit
CACTTACAGAATGCAGCCGTAAATGCGGTAAATCTATTTACAGAGGTTGG24.3478260869565215No Hit
CTTCGAGCAGCTGATGGAGCTGTGGCCATCTTTCCAGAAATTTCAATTCC12.1739130434782608No Hit
GGATTGACAGATTGATAGCTCTTTCTCGATTCCGTGGGTGGTGGTGCATG12.1739130434782608No Hit
GGTTAACTTGTACACTAGATGTTGATGAAATCGGTGATTGAGATTTTGTC12.1739130434782608No Hit
GTGTGTTTGCAAAGCTCCCCAGGTGAACATAACGTGCACCCAGGGTGAAA12.1739130434782608No Hit
ATGTTGACCACGGGTGACGGGGAATCAGGGTTCGATTCCGGAGAGGGAGC12.1739130434782608No Hit
TTCCTATTCACCGTGTGAAGAGATGTGAGGTACTTGTGATTGTGTAGAGG12.1739130434782608No Hit
ACTCTGTAGTAAAGAGCTTATAGAACTAATGGTTCATTAGCATTAGTTTG12.1739130434782608No Hit
ATTCGAACGTCTGCCCTATCAACTTTCGATGGTAGTCGCCGTGCCTACCA12.1739130434782608No Hit
AAACAGCATGGCACTGGTATAAAAATTGACACGAACACCAATAAACAGGA12.1739130434782608No Hit
TCACTGAATACAGCCCAACCCAAGGAGTGAGGATCCTAGAATTTGAGAAC12.1739130434782608No Hit
CTCCCTTTCGATCGGCCGAGGGCAACGGAGGCCATCGCCCGTCCCTTCGG12.1739130434782608No Hit
ACTGTGGACAATGCCCGCATCGTTCTGCAGATTGACAATGCCCGTCTTGC12.1739130434782608No Hit
CTATCTTTTTGAAGTTATAACTATCCTAGTGAGTATAAGGTGGTACCTCA12.1739130434782608No Hit
GGGATAACTGGCTTGTGGCGGCCAAGCGTTCATAGCGACGTCGCTTTTTG12.1739130434782608No Hit
GTCACCGTCCTCGGTAGGTTGGAAGGGCGGCTGGGCTAGCAAGATGGGGT12.1739130434782608No Hit
GGTCCGGGCTCCGCTCAGCACCCTCAACGGCGAGATCAGCGCCCTGACGG12.1739130434782608No Hit
GAGTTCTTGATTTGATTTTCTGGCCACTGTTGGTGTCTGGAAGAACTACT12.1739130434782608No Hit
CAGGAACATCCTCGTGTTAGAGATTGATGCTGCTTCGTGTCGGCACGAAG12.1739130434782608No Hit
CACCTGTAATCCCAGCACTTTGGGGGGCCGAGGAGGGCAGATCATGAGGT12.1739130434782608No Hit
CGCCATAGCGGGGGCCGAGGGGACATGGCTGTCCAGGTTGCTTTCGCCCC12.1739130434782608No Hit
GTACTGGTACATGCTACAACTTGGATAAACCTTGAAAACATTATGCTAAC12.1739130434782608No Hit
GTATAAGTGACGTTGTTTCGTCGATGTGATGAGTATCACGTTTTTTTACG12.1739130434782608No Hit
GCATATTTCCGGCATCATGCTTTTCCTGCTGTTGCATGTAATCTTCAGCC12.1739130434782608No Hit
GGCCAACATGGTGAAACACCTGCCTCAGCCTCCCAAAGTGCTGGGATTAC12.1739130434782608No Hit
CGGCAAAACAGAGTGCACTTTCGGCTTGCTGTGCGGCACGACCGGCGGCT12.1739130434782608No Hit
ATTTTCGTCTGCGTTTAGTAAATGCGTTAACTAGGCTTTAAATGACGCAA12.1739130434782608No Hit
GTACATGGGTGGCAGTTGTTTGAATATTGAAAAAAATTGAGCTGGGCACG12.1739130434782608No Hit
TTGCAGCCAGGGCCGGGATCGACTCGGCATTTCGCACCGTCCGCACGTTC12.1739130434782608No Hit
TTAGTATTCAACAGACTCATGTTATTTCTTAAGCAGATTGCTCAAGTTCC12.1739130434782608No Hit
CGCCTGGATACCGCAGCTAGGAATAATGGAATAGGACCGCGGTTCTCTTT12.1739130434782608No Hit
CTCCTCCTCAGCCGCCTGCACAGCCTCAGAGAGGTGCTGGAATGCTCTCT12.1739130434782608No Hit
CAGCCGCTGTTCTGTGTGTGAGGCCCCGGCCATCGCCATCGCGGTCCACC12.1739130434782608No Hit
CTGCAGCAGCACCACCGCCAGCACAGTGGGAAACTCCAGCTCACACAACA12.1739130434782608No Hit
TAGCTGGCTTATCAGGCGCGACGCTGACGGCTAACGGTGTGCAAAATACC12.1739130434782608No Hit
ACCCTGATTCGATCATTATGCATTGCACACATGTATCAAAGTATCACTCT12.1739130434782608No Hit
CAACAGGATAATCCATGGGGTTTCGTTGGGTTGTGCGCAGCCAAAACTCG12.1739130434782608No Hit
GGCCTGAGCCACTGTGCTCAGCCATGGTATTCTTAAAACAGCAGATTTTT12.1739130434782608No Hit
CCCGCCCAGATGGTAGCTTCGCCCCATTGGCTCCTCAGCCAAGCACATAC12.1739130434782608No Hit
CATCCAGAACGAGAAGGAGACCATGCAAAGCCTGAACGACCGCCTGGCCT12.1739130434782608No Hit
CAATTCTTCTGATACCAAGAACAGAAATACAAGTTATGTTTCACATAATA12.1739130434782608No Hit
TCCCTTGTATGTGTATACCACATTTTATTTACCCATTCATCCAGCTATGA12.1739130434782608No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)