FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003634488

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003634488
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences118
Sequences flagged as poor quality0
Sequence length100
%GC48

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTCCTATCATTGTGAAGCAGAATTCACCAAGCGTTGGATTGTTCACCCA54.23728813559322No Hit
CTCCCGGGACGAGAACTCATCCGGAGCCACAGGTGCACTGCCTGTGGACT43.389830508474576No Hit
CTTGCTGATTTATTTTAGGTTTAACTGGTAAAGAATGAACATTTCAGAAG43.389830508474576No Hit
AAGCGTCAGTTAGGCACACCTGCAGGCCCCTCGGAGGGACAGCGGCTGTC32.5423728813559325No Hit
ATTAGTGGGTGAACAATCCAACGCTTGGTGAATTCTGCTTCACAATGATA32.5423728813559325No Hit
TCTCTGGACTTCAACATTTTCACTAGATTGGTGATAACCTTAAATAACTG32.5423728813559325No Hit
GCCTTCAAGGGCCGCAACGCGCTTCTCCAGCACGTCGGTCGTGGGATTGC21.694915254237288No Hit
GTGCATGGCCGTTCTTAGTTGGTGGAGCGATTTGTCTGGTTAATTCCGAT21.694915254237288No Hit
ACGCAGGTGTCCTAAGGCGAGCTCAGGGAGGACAGAAACCTCCCGTGGAG21.694915254237288No Hit
TCTTCGAACCTCCGACTTTCGTTCTTGATTAATGAAAACATTCTTGGCAA21.694915254237288No Hit
TCCCTGTTCTTATGAATTCGAACAGCATACCCCCGATTCCTGTCTCTTAT21.694915254237288No Hit
GCGCAAGACGGACCAGAGCGAAAGCATTTGCCAAGAATGTTTTCATTAAT21.694915254237288No Hit
CTCCTTGCCTGACTTTCACTTTAACTGCTTTACACCTGAGATTTTTGCCT21.694915254237288No Hit
TGATAGCTCTTTCTCGATTCCGTGGGTGGTGCCCTTCCGTCAATTCCTTT21.694915254237288No Hit
GTGAAATAATCACAAAGTGAAAATATATCCTCAAACAGCCCCTGAGATCC21.694915254237288No Hit
GGCCGGAACCTCCTCAGCTGATCGTCCTTAGCCAGTCCAATCTCTACGAG21.694915254237288No Hit
ACGTTGATCTGAAGCAATCTCAGCAGAAACTAGAACATTTGACTGGAAAT21.694915254237288No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT21.694915254237288Clontech Universal Primer Mix Long (96% over 26bp)
GCGGGATTCTGACTTAGAGGCGTTCAGTCATAATCCCACAGATGGTAGCT21.694915254237288No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAATAA10.847457627118644No Hit
CACAAAGGCAATGTGATTATTGCATAATGACACTAAATATTATGTGGCTT10.847457627118644No Hit
CCTGTAATCTCAGCACTTTGGGAGGTCAAGGCGGGTGGATCACCTGAGGT10.847457627118644No Hit
GCGTCTGGCTGCCCAGTTTTTTTAGTGGTGGGGGGGCGGACCGGGGGGGG10.847457627118644No Hit
GATTAAGAGGGACGGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAA10.847457627118644No Hit
CAGTACGAATACAGACCGTGAAAGCGGGGCCTCACGATCCTTCTGACCTT10.847457627118644No Hit
TCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGGTGT10.847457627118644No Hit
GGGATGTTGGTGGCCACAGGAAGCAACTCCTTTGCCTGTGAAAAGAAAAG10.847457627118644No Hit
CTTTATTTTATTTTATTTATTTATTTTTTGAGACAGGGTCTTGCTTTGTA10.847457627118644No Hit
CCGTTCCATTCCATTCCATTCAATTCTATTCGGGTTAATTCCATTCCATT10.847457627118644No Hit
CTCAGAACCCACCCGCAGGGCTCATGAGTATGCCCAATGCGCTGACCACT10.847457627118644No Hit
ATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACGTCGCTATGAA10.847457627118644No Hit
GTGAGACCCTGTCTCAAAAAAACAAACAGAATGCTGAGTTTTAAATCCCT10.847457627118644No Hit
ATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGTTGGATCTTGGGAGCGG10.847457627118644No Hit
GTGGGTGACAGAGCAGGTGATACGTGAGAGTCAGTGAAAATGCACTGCTG10.847457627118644No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATTCGTTTAAAAC10.847457627118644No Hit
GGATAGGGCAGATCAAGGAGAGCCATCTGAGCTCGTCACTTCCAGTGTGG10.847457627118644No Hit
TTCCAGTTCTGGAGTTTCTTCGGCAGGACGCGTGGGCAGCGAGACTGCAG10.847457627118644No Hit
CTCTAACATTATAAAAGTCAGACCCAAGGTAATACCTTTCCCACTCCTGC10.847457627118644No Hit
CTCTTGCTTCATCCAGGCAAGAACGGTGTTTTGTTTGCGACCATCTCAGT10.847457627118644No Hit
CCCCCCTGTGTCCTCCAAATAGAATTTGGATACATTTATATATTACCTTT10.847457627118644No Hit
GCACGCGCCCCGCGCGCGCGGGAGGGCGCGTGCCCCGCCGCGCGCCGGGA10.847457627118644No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTG10.847457627118644No Hit
CTACAGGCGCCCGCCACCAAGCCCGCCTAATTTTTTGTATTTTTAGTAAA10.847457627118644No Hit
CTTGGCGGCAGAAGCGGGAGCCCCCCGGGGGGGTCGCGTGTTGGGCCAAG10.847457627118644No Hit
CCGGGTTGGTTTTGATCTGATAAATGCACGCATCCCCCCCGCGAAGGGGG10.847457627118644No Hit
AAACACTCCTACTGGTTGGACCTCTGGCTTTTCATCCTTTTCGATGTGGT10.847457627118644No Hit
GGGTAGGCACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCAGCCCCGGAC10.847457627118644No Hit
GAGTACTTTTTTTTTTTTTTTTTTGCGTTGATACCACTGCTTCCCATGTA10.847457627118644Clontech Universal Primer Mix Long (95% over 21bp)
GCCTGGGATATTAGGGTTGTAAATCACAATTAAAGATGAAAAATGTTAGG10.847457627118644No Hit
GCACAAGGACACCATCGACTGGGGCCCCAACTGGGATGACGATCTTGGTG10.847457627118644No Hit
GATACCCATAAAGCACTTCTGTTTAAAAGCTCCAACCAGCTCATGCCAGC10.847457627118644No Hit
TTATTATACGAATGGGGGCTTCAATCGGGAGTACTACTCGATTGTCAACG10.847457627118644No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTGATATAA10.847457627118644No Hit
GTATTCAGCCATGTATTCTGACTATGTAGCAATTCCTTTTCTTGCTCTTG10.847457627118644No Hit
CCACTCCTGGTGGTGCCCTTCCGTCAATTCCTTTAAGTTTCAGCTTTGCA10.847457627118644No Hit
TACATGCAGGAGATGGTCGCCGACCACCAGAAAGCGGTCAGCGACTTCCG10.847457627118644No Hit
CCCATGTACTCTGCGGTGATACCACTGCTTCCCATGTACTCTGCGTTGAT10.847457627118644Clontech SMARTer II A Oligonucleotide (96% over 25bp)
TGCGTGCATTTATCAGATCAAAACCAACCCGGTCAGCCCCTCTCCGGCCC10.847457627118644No Hit
CAGCTCAATACCCTGCCAACGCAGAGCCACCACTGCGCGCTTAGAATCGA10.847457627118644No Hit
GATTTATCTCCACACTAGCAGAGACCAACCGAACCCCCTTCGACCTTGCC10.847457627118644No Hit
CCACGGGGGGCGTGCGATCGGCCCGAGGTTATCTAGAGTCACCAAAGCCG10.847457627118644No Hit
AGCCTGGTCAGCCAGGAGCTTCTTGCGGGCCTTGTCTGCCTTCAGCTTGT10.847457627118644No Hit
ACTTTCGATGGTAGTCGCCGTGCCTACCATGGTGACCACGGGTGACGGGG10.847457627118644No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT10.847457627118644No Hit
GGTCAGGGTGAGCTGACCATGATCGGGGCCGCAACGCTCGTCGTCGTCGC10.847457627118644No Hit
GGGCTGGGTGGCAGGGGACGAGACAGGGGGCTGTTCGGCGGTGCGGGGAA10.847457627118644No Hit
TCGGTCCGGAAAATGGTGAAGAAAATTGAAATCAGCCAGCACGCCAAGTA10.847457627118644No Hit
ACTAGTTACGCGACCCCCGAGCGGTCGGCGTCCCCCAACTTCTTAGAGGG10.847457627118644No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT10.847457627118644No Hit
AACCCAGACCCTTCATCATCGATATAGGGTTGATTACGGCTAACATCCCA10.847457627118644No Hit
ATGCTGAATAGCATGATTATGTGCAATACATAAATATGAACTATCTGTAC10.847457627118644No Hit
TGTCCGTGTCCGGGCCGGGTGAGGTTTCCCGTGTTGTGTCAAATTAAGCC10.847457627118644No Hit
GTATGAAAGGCTCCACGATGGTTCATCTGTCTCTTAATTTTAACCAGTGA10.847457627118644No Hit
ATGCAATACACCCAAGAACACTAGAGTCCTACACCCAAGTACAATATGAT10.847457627118644No Hit
ATCCCACCCTTTGGGAGGCAGAGGTGGGAGGATCACTTCAGCCCAGGAGT10.847457627118644No Hit
ATCTAAGGGCATCACAGACCTGTTATTGCTCAATCTCGGGTGGCTGAACG10.847457627118644No Hit
CAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTATAATT10.847457627118644No Hit
CCTCTAGCGGCGCAATACGAATGCCCCCGGCCGTCCCTCTTAATCATGGC10.847457627118644No Hit
GAAGTTCTTTGATCCAGAGGTGGGTGCAGCTGAAAGTAAACAGAATGGAT10.847457627118644No Hit
CCCCGTTTCCCCGTCACGCACCGCACGTTCGTGGGTTACCTGGCGCTAAA10.847457627118644No Hit
AGACGGACCAGAGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCAAGA10.847457627118644No Hit
GTACATGGGAAGCAGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAA10.847457627118644Clontech Universal Primer Mix Long (95% over 21bp)
GACTCAGGGTGTTTGCTCGCCTCCTGAAGGCCTGCTGGGGCGACAGCGGA10.847457627118644No Hit
GAATGCCCCCGGCCGTCCCTCTTAATCATGGCCTCAGTTCCGAAAACCAA10.847457627118644No Hit
AAATAAACAAGAGTGGGGGAGAAAACCCAAAATCGAACACAAACAGAAAT10.847457627118644No Hit
GCGCAGCACCGTGCCGACCAGGATCAGCACCATGCAGCCGAGCAGCGTGC10.847457627118644No Hit
ATACTCCCCACAGTCTACTTTTACAAACGCCTGTAAAGACTGGCATCTTC10.847457627118644No Hit
GTTGGGATCTATCTCTTCCCTCACCATTCTTACTACCCCACAAGCATACT10.847457627118644No Hit
ACATGTGTCATGGTGGCTTACTGCACAAGTCATCCCATCACCCAGGTATT10.847457627118644No Hit

[WARN]Adapter Content

Adapter graph