FastQCFastQC Report
Wed 31 Aug 2022
EGAF00003634562

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003634562
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences27
Sequences flagged as poor quality0
Sequence length100
%GC49

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCACATGAAACATCCTATCATCTGTAGGCTCATTCATTTCTCTAACAGCA27.4074074074074066No Hit
CCCCGGGTTCGTCCCCTATAAGGGCCTAGTACCTTTCGAGCCCCGCGCGT27.4074074074074066No Hit
ACATGCTGCTGTGCGAGGCCACGCAATGCGTGAAGGTGGCCGACCACGTG27.4074074074074066No Hit
GGTTCTTCGAATGTGTGGTAGGGTGGGGGGCATCCATATAGTCACTCCAG27.4074074074074066No Hit
ATCTAACAGGCTGACTCTCTAAACTATCACCCTCTCTGATAAGCTGTTCT27.4074074074074066No Hit
CTCTAATTTTTTCAAAGTAAACGCTTCGGGCCCCGCGGGACACTCAGCTA13.7037037037037033No Hit
GAGTACATGGGAGTGAGCCGAGATCGCACCACTGCACTCCAGCCTGGGCG13.7037037037037033No Hit
ATATTGAGATTCTGTGCCAATTTTTGGTCAGCTTAATTATGGGTGGAATA13.7037037037037033No Hit
TCTTTCAAGTCATTTGTCTGCACCTCTCGGGTCATGATTTCCATCATCTT13.7037037037037033No Hit
CAGTAATTCCAAACGCTTCCCTTTGTTTCCACAGCCCTAGCGTAGCAGGT13.7037037037037033No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG13.7037037037037033No Hit
GTACTAGACATCGTCATCCAATGCGACGAGTCCTACACTATCTTGGATAT13.7037037037037033No Hit
GTACTAGACATCGTCATCCAATGCGACGAGTCCTACCCTATCTTGGATAT13.7037037037037033No Hit
GGGTGGGGGGAGGGGAATGGGCAGGCAAGACAGTCTTCTGTCTGCATTTG13.7037037037037033No Hit
AGTTCTGTCCTATGAACTCCATAGTGACCCCTTTTTACCTTGTTCCAGAT13.7037037037037033No Hit
GTGGAGCAGAAGGGCAAAAGCTCGCTTGATCTTGATTTTCAGTACTGTCT13.7037037037037033No Hit
GCTCAGAGGTGCTTTGAAGATGCCGGAGGCCCCGCCTCTGCTGTTGGCAG13.7037037037037033No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTAGGCTGTT13.7037037037037033No Hit
AATTTGTTGAGTTTACAATCAAGTCTACTAAGGTTGGACTTCCTTATCAG13.7037037037037033No Hit
AGTCATAACACTTCAGTAAAAATGTTTATGCTTTCTAAGTACTTACAACA13.7037037037037033No Hit
ATATAAAGAGCTCCAAATTTCAATAACAACCCAAAAAATCAATTTGAAAA13.7037037037037033No Hit
GCTAAATCCCCTAGAAGTCCCACTCCTAAACACATCCGTATTACTCGCAT13.7037037037037033No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)