FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003634611

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003634611
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences85
Sequences flagged as poor quality0
Sequence length100
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTTATTAAAATGCCAAAAGGTGATATTTGACCACTCACATGACTGGTTT22.3529411764705883No Hit
GCCTTGGCCTCCCAAAGTGCTGGGATTACAGGTGTGAGCCACCGCACCAG22.3529411764705883No Hit
ACCCAATGGCTAGGCCTGACAAGGTCGCTGCGGTCGCCGAGCTGAAGGAG22.3529411764705883No Hit
GCCTGCAGGTGGTGACGAGGTGCGGCCATCGCTGCAGTGGGACATGCCGG22.3529411764705883No Hit
GCCTTGGCCTCCCAAAGTGCTGGGATTACAGGTGTGAGCCACCGCACCTG22.3529411764705883No Hit
GTGCGGGGATTACAGGTGTGAGCCACCACGCCTGACCAGGAAACAATTCT22.3529411764705883No Hit
CTCTGTGAGTTGAGGACACACATCACAAATAAGTTTCTGAGAATGCTTCT22.3529411764705883No Hit
AACGGCTCCCAGCCGGGGAACGGCATCACGCCGTCGACGACGTCGAAGAA22.3529411764705883No Hit
CGACATCCCGCTCGACCGGGTCGGGCGCGACGACCGGCTGGCGGCCGCGC22.3529411764705883No Hit
ACATTAGGATATGAGATAGACATATAGCTGGCATGCACACAAGATTCTCC22.3529411764705883No Hit
CACCAAGATGGTGCACATCGGCGCCAACAAGCGCTCGACCATCGTGTCGA11.1764705882352942No Hit
GTTTCCATTCCATCGCATTCCATTCCATTCCATTCCCCTACACTCGCGTT11.1764705882352942No Hit
TTCCTCTACCCTAACCGGGTACTCGAGGAACGCGAGCTGCTTTCCCGCAA11.1764705882352942No Hit
CTCTTGCAGGGCCAGGCTGGAAGACCGGCCCTTTTCTTGGTTGAGTCAAA11.1764705882352942No Hit
GAGTGAGACTCTGTCTCAAAATGAAACCAAAAAAAAAAAAAACCCATACC11.1764705882352942No Hit
GCTTAAGGAGATTTTGGGCTGAGACGATGGGGTTTTCTAGATAAACAATC11.1764705882352942No Hit
ACTTTAACTGGGGTCAGATGATATCCCATTTTGTTTTGGTTTGCATTTCT11.1764705882352942No Hit
GATTAGGGCCAGGCGTGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGA11.1764705882352942No Hit
GTCCGGGCCTTCATTGCATATTCCTGTTTCTTTTCAAATTTGGTTTTTTG11.1764705882352942No Hit
GCCCAGCACCAGACGACCTGAAAGGTTGGCGATGGAAATAACAGTGACTG11.1764705882352942No Hit
CTAATGCCCTGCTTGCCAACTTTTGGCTGTCTAGAATGGAATGTTATTCT11.1764705882352942No Hit
GTGCGCTGATCCGCGCGGCCACGGGGCTGCTCCTGCGTCACGAGGGCGAG11.1764705882352942No Hit
CCCTAGGCACCCCCTGTTAACATGGGTGAAAGCCTCATTGGCACCCATGG11.1764705882352942No Hit
CGCTGGCGTTGGCACCCTGCAGCTGGCCTTGTTCGGATTCGGACACGCGG11.1764705882352942No Hit
GTCTATCATTGTTGGACATTTGGGTTGGTACCAAGTCTTTGCTATTGTGA11.1764705882352942No Hit
CGATTTCTCGCAGCAAAACGACCGAACTCAATCAGTCGTGCTGTCTCTTA11.1764705882352942No Hit
TCCATTGTCAGGGCGACCCTCACCGATCCCTCCGGACTGGCCGAGGGTCT11.1764705882352942No Hit
AGTTAACATAAAGAAAATTCAAATAAAATTGATCAGAAAAAAATCAGAGG11.1764705882352942No Hit
GCCGAGATGGTGTCACTGCACTCCAGCCTGGGTGACACAGCTAGACTCTG11.1764705882352942No Hit
CTGTTGCAGCGCGGCAGCCTGCCGACCGACCCGCTCGGGGAGCACGCGGA11.1764705882352942No Hit
GCAATATGTTAGGCATTCAGAATCAAAAGTAGAAAAGGCTATCATAGCCC11.1764705882352942No Hit
GGCGAAAGAGTGAGACTCTGCCTCAAAAAAACAAAAAACAAAACCAAACA11.1764705882352942No Hit
GAGGTGGAAGGATTGCTTGAACCCAGGAGGCAGAGGTTGCAGGGGGCTGA11.1764705882352942No Hit
CGCCCAGGCGGCGCATCAGCTTGGCGCGGTGTTTGGCCGGGGTATTGGCC11.1764705882352942No Hit
GATTAGGGCCAGGCGTGGTGGCTCACGCCGGTAATCCCAGCACTTTGGGA11.1764705882352942No Hit
ACCATTAAGTGCAGAAATAATTTCATCCAGATTTTTCCAATTGATGGAAA11.1764705882352942No Hit
GCCCCGGACCCCGATCCGGGGTCGTCCAGAACCCACACGTTGACGTGCTT11.1764705882352942No Hit
CTGTAAGTCAGACTTGCTAAGAGTTTTCGTTGGGGAGACGCACACAGGTA11.1764705882352942No Hit
ATCGAGGAGCAGGCGCCGGCAGACCGTATTGCGCAGGACGCGCGGGCTCA11.1764705882352942No Hit
AGGCAGGCCTGCAGGCTTGTCTGGGCCGCCGGCCAGAATCCTGGCGCCCT11.1764705882352942No Hit
CTTATACACATCTCCGAGCCCACGAGACGAAACGCTTGAATTCTCGTATG11.1764705882352942No Hit
CCTGGCCTGTAATCTCAGCGCTTTGGGAGGCTGAGGCAGGCAGATCACCA11.1764705882352942No Hit
GTCTTAGAAATAACATAAATGGGGGAAAAATAAAACAGGTTTCATCTGGG11.1764705882352942No Hit
CCATTTCACATGGCCACTGCTAGCTGCAAAAAAACCTTTCAGGGCTCTGT11.1764705882352942No Hit
ATTACAAGCTGACCCTGGCCGGAGACGGACCGGACTCGGTGGGAGAGATG11.1764705882352942No Hit
CCTAACCCGTCGTCTGGTGGACGTGTCGCAGGATGTGATTGTGAGTGAGC11.1764705882352942No Hit
TTGCAAAGGGGATTGAGTTCTGGATTTGATTCTCAGTTTGGTCACTGTTG11.1764705882352942No Hit
AGGTGAAGCGGATCGCGGCGCCCATGTCGTCGTCCGCGCGCAGCGAATGC11.1764705882352942No Hit
CTCGTACACATTAAGCCCTTGGCTTGTAATTACATGTAATACATCATAAA11.1764705882352942No Hit
TCGCCAAGGTGCCGAAGTAGACATCATCGTGGAAACCCCGGCAGGCATCA11.1764705882352942No Hit
GGCCGCACCCGGACGCCGCCCGCTTCCTCGGCCAGGTTCAACGTGGCGAC11.1764705882352942No Hit
CATTGAGCCTGGCTCTGTGCTGGGCACTGGTGCTCGGGATACAACAGTAA11.1764705882352942No Hit
GGCGAAAGAGTGAGACTCTGCCTCAAAAAAACAAAAAACAAAACAAAACA11.1764705882352942No Hit
CTCCCAAAGTGCTGGGATTATAGGTGTGAGTCCCTGCACCGGCACCTGTA11.1764705882352942No Hit
GCCTTTGTAAAAGAAATTGAGTTATTGATTTGATTCTCAGCTTGGTCACT11.1764705882352942No Hit
TCCTTGGGGCTTTAAAGTTGAATTAATTATTAAACAGGAAGGGAGCAGTA11.1764705882352942No Hit
CTGTACGAGGCCAAGGAAAACGGCCGCAACCAGGTGGTCACCAAGTCATG11.1764705882352942No Hit
GTAGCCGGGGTTGACTCTGCCTCAACCATCATGATGGCAACGTCGCCGTC11.1764705882352942No Hit
CAACAGCGGATGAAATGTTCCGGCTCCGGCGAGGAATTGGACAACAGGGC11.1764705882352942No Hit
GTGGCGTGCACGGTGGAGTCGGTCTGATCGAGCACGGTGACGGTGAGGCC11.1764705882352942No Hit
CTTATACACATCTCCGAGCCCACGAGACGAAACGCTTGAAATCTCGGAAT11.1764705882352942No Hit
GTTGTGGCTGTTTTGTTTTGTTTTGTTTTTTCTTTTTCCCTACTCATGGC11.1764705882352942No Hit
CGCCGCCCGGCGAACGGCTGCCCCGTCATCACAGACGCGGACAGATCGAT11.1764705882352942No Hit
TTTTCCCGCCGATGAAGTGCGGTTTTTCGCTTCCGCCCGTTAGGCTGGCC11.1764705882352942No Hit
ATATATCCCAGACTTGGAGTTGGAGAAACTGGAAACCTAGAAATGCCAAC11.1764705882352942No Hit
GGCGGCAGATGCAGCATGCGGAAGCCGACCACGCCAAGCACGGCCGAACC11.1764705882352942No Hit
TCCATATTGTGCTTTGTGATATTGGGACTAAGACCATGCAAAATTCACCT11.1764705882352942No Hit
GATATATTGAGGATGCCAACAAGTTTTTAGAAATTTTATGATTTTTTTAT11.1764705882352942No Hit
TTTCGGTACGATGCGCCACTAATCCGCCGTAATCGGAGATCAACTTTCCA11.1764705882352942No Hit
CATCTGTTTCGTCAGCGATCCCGCGGGAACCCCGCACGTGGCCCACGGGA11.1764705882352942No Hit
CAAAACTGCTCTCTCAAAAGAAAGGTTCAACTCTGTTAGCTGAGTAGATA11.1764705882352942No Hit
TCTTATACACATCTCCGAGCCCACGAGACGAAACGCTTGAAATCGCGTTT11.1764705882352942No Hit
TTATATGAGGAAATCCCGTTTCCAACGAAGGCCTCAAAGAGGTCCAAATA11.1764705882352942No Hit
CTTATACACATCTCCGAGCCCACGAGACGAAACGCTTGAAATCTCGTATG11.1764705882352942No Hit
TTTTCCCGCCGATGAAGTGCGGTTTTTCGCTTCCGCCCGTTCGGCTGGCC11.1764705882352942No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)