FastQCFastQC Report
Wed 8 May 2024
EGAF00003635029

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003635029
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1317846
Total Bases131.7 Mbp
Sequences flagged as poor quality0
Sequence length100
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTACATGGGTACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAG15650.11875439163604852No Hit
GTACATGGGGAATAATTGCAATCCCCGATCCCCATCACGAATGGGGTTCA14460.10972450498768446No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT13290.10084638114013322No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)