FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003635143

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003635143
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences171
Sequences flagged as poor quality0
Sequence length100
%GC49

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CACCATGACAGGGTGACCCTGGAGGTGGGCAAGGTGATCCAGCAAGGTCG63.508771929824561No Hit
GAAGTTGACTTACTGAAGAATGGAGAGAGAATTGAAAAAGTGGAGCATTC31.7543859649122806No Hit
AGTGGAGCATCCACGAGATTCTTGAATATCCAGACCAGTGAACACAGATT31.7543859649122806No Hit
CCCCTACAGGGCCACCTTGGGGTCCACTTCCCCGGGTCCCTGGCCTTTGG31.7543859649122806No Hit
GTGAGGAGAACGGAACTGGCGGCCAAGGGGAACCGGCGGAACGAGATCAG31.7543859649122806No Hit
ATACTGAAAAGCTTTAATTGTTTTCCAGTATAGTTGATCTCTGCCTTCTT31.7543859649122806No Hit
CAAAAAGACTCTTCTAGACCAGCATGGACAGTACCCAATATGGATGAACC21.1695906432748537No Hit
GGTATCAATCAGTAAGGAAAACAAATAGAAAAAGAGGCATAATCTGGTAT21.1695906432748537No Hit
GCGAGCAGCCAAGCTCAGCGCAACCTCCGGGCTTCTCGCTCTGACTCCAA21.1695906432748537No Hit
ATTCAGACCCGGCCGTGTCGCCGGAACCGAGGCCTTCCGTCCGCCGCTGC21.1695906432748537No Hit
GTACATGGGGAGCGGAGCAGAGCCGAGGTCGGGCCGCGAGCGGAGCCGGC21.1695906432748537No Hit
CCTTGGAGGCGGCAACAGCTTTAGTAATGAGCTCGGACACCGGGGGCCCA21.1695906432748537No Hit
GAGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCAAGAACGAAAGTCG21.1695906432748537No Hit
GGTATCAACGCAGAGTACATGGGAGACCTCCCGGCTCGACAGGCGGCGCG21.1695906432748537No Hit
CTGGTGACCTTGCTGCTCTGGAGGCCCGGCTCCGTGACTCCTTCCTCCGA21.1695906432748537No Hit
GCAGTATGAAGTCGTTCATGGTTAGCATGAAGAAAGGAGTCCCCATTTCC21.1695906432748537No Hit
TCACTGCGTTGACCAGGCTGGAGTGCAGCAGCATGATCATAGCTTATTGT21.1695906432748537No Hit
ATAAAAATGTGTGTCAACACAGGTTTCCATTTGAATGCTTATAGCAATGT21.1695906432748537No Hit
CGACAGCGTGTTCATCGAGAAGTTCATCGAGCAGCCAAGGCATATCGAGA21.1695906432748537No Hit
CTTCTATAGGGTGATAGATTGGTCCAATTGGGTGTGAGGAGTTCAGTTAT21.1695906432748537No Hit
GTCCTGAGTTTGGTCCTCGCCATCCCGCTGCCAGGTCAGTGTGATCTCCG21.1695906432748537No Hit
CTGTAGTATCAGTCAGTCCAGGAATATCCTTCTCTCCTTTTTTTACAATA21.1695906432748537No Hit
TTATTTATGTCTAAAATTTCCTTCCAAAGCTTCAAATGATTCAGAGGAAA10.5847953216374269No Hit
GTGCTGCAGCCATGTCTCTAGTGATCCCTGAAAAGTTCCAGCATATTTTG10.5847953216374269No Hit
AAAATTCATAGAAGACAAGGATATAATAATAGAATTTGGGCTCACTGGAG10.5847953216374269No Hit
ACACAATATTTATTTCATTTGTTTCTTTTATTTCATTTTATTTGTTTGCT10.5847953216374269No Hit
GTACATGGGACCACGCCTCCTCCAAGTCCCAGCGAACCCGCGTGCAACCT10.5847953216374269No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCG10.5847953216374269No Hit
TCTTACGTGGTGCCAGACAAGAGAAAATGAGAATGAAGCCTAAAGTGTTT10.5847953216374269No Hit
GCATACATCATCTGTTGTTCCGGCTTGCAGCCCACAGGGCTGGAGAAGAT10.5847953216374269No Hit
GTTCAATAGTAACCCTTTCACTACAGAGTTCTTTTCCATCAAGCTCATAC10.5847953216374269No Hit
CACGAGTCTCTTCCACCTCGGAGGCTTCCAGCACAAACCATATTCATTCC10.5847953216374269No Hit
ATGTTGGCCTGCACTGGGGCCAGCGTCCTCAGGAAGGTGTCTTGGAGGAG10.5847953216374269No Hit
GCATTTATCAGATCAAAACCAACCCGGTCAGCCCCTCTCCGGCCCCGGCC10.5847953216374269No Hit
GACAAAGTCACATGGTTCACACGGCAGGCATACTCATCTTTTTCAGTGGG10.5847953216374269No Hit
TCTTCAAATTGCGCTTGTCGGCTATACAAACGCAGGGAAATCAACATGGT10.5847953216374269No Hit
CAATAATCTATTGCATTCAGGTTATCTGAGAGGAAGCATTCAACATATTA10.5847953216374269No Hit
GGTTCACTGCAACCTCCACCTCCCAGGTTCAAGCAATTCTCCTGCCTCAG10.5847953216374269No Hit
CAGAAAACAGAAGAAAAAGCAGGGGTTGCTTTCTAATTTCAGACAAAGCA10.5847953216374269No Hit
AACGAAAGTTGCAAAAAATCATTCCCATATTTCCTAGAAATGTTGGTTTG10.5847953216374269No Hit
TGAGACTCTGTCTCAAAAAAAAAAAGAATGACTGATGAGGGAAGCACAAA10.5847953216374269No Hit
TATTGTAAGCCGTCAGCATCGGGATATCATCTGCTTCAAGCTCCTCAAGC10.5847953216374269No Hit
TTCATAAAGCAAGTTCTTAGAGACATACAAAGAGACTGAGACTCCCACAC10.5847953216374269No Hit
AAGCTGGATGGAGAATGACTTTGACGAGTTGAGAGAAGAAGGCTTCAGAC10.5847953216374269No Hit
TTTCTCCAGTATCAGGTATTCTTCTGCTCTCCTTAAGGCTAAATTACAGG10.5847953216374269No Hit
GGAGACGATGTTGCAGCAGCTGGTGGCGATGAACGCGCGACTGAAGAGCG10.5847953216374269No Hit
AGCCAGGGCACGACCCAGACTTCAGAGTAGCAGCTCAGAGTCTGCTTCAA10.5847953216374269No Hit
CTCCTACTTGGATAACTGTGGTAATTCTAGAGCTAATACATGCCGACGGG10.5847953216374269No Hit
GTTAGCGCCGCCTGGCCTGGGCCGGACCCGGTCAGGGTTCTCAAGCTGTC10.5847953216374269No Hit
CTATAAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATG10.5847953216374269Clontech Universal Primer Mix Long (96% over 26bp)
GGTGAATTCAAAGGGAAAAAAATGAGAAAGTACTGAAGGTCAAGTTGAGG10.5847953216374269No Hit
ACGTGGGGTCGGACTGGCGCTTCCTCCGCGGGTACCACCAGTACGCCTAC10.5847953216374269No Hit
GTATCAACGCAGAGTACATGGGAGAAGCCGATACCGTGAAAGAAGAAAGA10.5847953216374269No Hit
GGCTAGCGGTCGTTCGAAACGCCGAAATGTCCTCTTCGGAAACCAACGGT10.5847953216374269No Hit
TAGTAAATGCGTTAACTAGGCTTTAAATGACGCAATTCTCCCTGCGTCAT10.5847953216374269No Hit
GGACGAGATGGCAGATGAGATTGCCAAGGCTCAGGTCGCTCGGCCTGGTG10.5847953216374269No Hit
GCTTAATTTGACCCAACACGGGAAACCTCACCCGGCCCGGACACGGACAG10.5847953216374269No Hit
TTATAACAAATTTCCAATAATCCTGTCAATTATATTTCTAAATTTTCCCC10.5847953216374269No Hit
CTCCTAAGTTTGTCATGACGTGACGTAGTTCTGCTGCACTGATATAACCA10.5847953216374269No Hit
AGTTTGTAACTACACTTTTTTTTTTCAAGTTACTAGTTTGTAACTACACT10.5847953216374269No Hit
CACCAATGGTACTGAACCTACGAGTACACCGACTACGGCGGACTAATCTT10.5847953216374269No Hit
CCATTTTCCTCATTAGCATTCCCGTTAGCAGGGGCGTCTCTTCCATTTTC10.5847953216374269No Hit
CTCCAATGGATCCTCGTTAAAGGATTTAAAGTGGACTCATTCCAATTACA10.5847953216374269No Hit
ACCTATTACGCCGCTTGCGAGCGCCTCGCGGACGACGTCGAACGGATCGT10.5847953216374269No Hit
CCATAAAACTGTAACTAAGTGAGGCTCTCTCATTGGTTTATACTTCAATA10.5847953216374269No Hit
GGGCCGGAGAGGGGCTGACCGGGTTGGTTTTGATCTGATAAATGCACGCA10.5847953216374269No Hit
TCCTAGAACCAGGCGACCTGCGACTCCTTGACGTTGACAATCGAGTAGTA10.5847953216374269No Hit
GTCTAATGCAATGTATGCATGACCCAGTCTTGATCCTCCAGATCAGGGTT10.5847953216374269No Hit
GCCTTTGACTCTTTACCAACATCTGCTCAAACTATCTGGACTCCATTTGA10.5847953216374269No Hit
CAGTGCTGTTTACTCATTGGAGGAACAGTACCTTGGCTTGGCTCTTGACG10.5847953216374269No Hit
GTCCCCAGCTAATTTTCACAACTCGGAGTCCCTTGCTTCCAAACACAGCC10.5847953216374269No Hit
TGGTGGTGCCCTTCCGTCAATTCCTTTAAGTTTCAGCTTTGCAACCATAC10.5847953216374269No Hit
TGGGTAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAAC10.5847953216374269Clontech SMARTer II A Oligonucleotide (96% over 25bp)
GCCTATATGTGCTTCTGTTTACCCACATAGATCCTTTACATATGCAATAC10.5847953216374269No Hit
TCTGACACCTCCTGCTTAAAACCCAAAAGGTCAGAAGGATCGTGAGGCCC10.5847953216374269No Hit
GCCGATGAAGCCGTCGCACACGCCGGCGCGCACCGGCACCTTCTTGAGCT10.5847953216374269No Hit
GCTCTAGAAATACCACAGTTATCCAAGTAGGAGAGGAGCGAGCGACCAAA10.5847953216374269No Hit
GTATTACATGTATAATTATAAGATATTGTTTGCTTCAACTAGCTGTACTT10.5847953216374269No Hit
CTGTAGCCGCTTGGCAGGACCATTTTTCTGGTCATCGGGTCCAGCGTGGC10.5847953216374269No Hit
CTTCAGATCAGTTAAGTAGGGCCATATGCCTCGGGAATAAGCTGACGGTG10.5847953216374269No Hit
TCCTTTGAGAAGAGACTGGAGGGATTCTTGGCAGGGGAGACCAACTGGTA10.5847953216374269No Hit
CAGGTCGCCTGGTTCTAGGAATAATGGGGGAAGTATGTAGGAGTTGAAGA10.5847953216374269No Hit
CTTCTTGGCCTTGCGCAGGCGCTTCAGCAGGGAGTGCTGCTTCCGCCGCA10.5847953216374269No Hit
TTCTATGACGGAGAATCCGTTTCAGGAAAGGTAAACCTAGCCTTTAAGCA10.5847953216374269No Hit
ACCAATAGAAGGGCAATGCTTTTAGATTAAAATGAAGGTGACTTAAACAG10.5847953216374269No Hit
CTAGATTTCACTGTCGTCCCACCCCACTTCTTCCACCCCACTTCTTCCTT10.5847953216374269No Hit
AAGCAAAGAAAATAAAGCAAAACCCATCCAAACAGTAAGCAGGTGGTGGC10.5847953216374269No Hit
AGAATGGCTCCCGCAAAGAAGGGTGGCGAGAAGAAAAAGGGCCGTTCTGC10.5847953216374269No Hit
CAAGTTTATTTGGTGAATGCTGACGGCAAACATCATCCAAGAGAGACAAG10.5847953216374269No Hit
GAATTCGTTACACATCATGGCGATGCAGGACAGGAAGACACAGTACTCTT10.5847953216374269No Hit
CCATTGCACGAGTCTCTTCCACCTCGGAGGCTTCCAGCACAAACCATATT10.5847953216374269No Hit
GGTTGCGGGGGTTCTAACCCGTCATGGTTTCAATACACATTCTTCTTTTG10.5847953216374269No Hit
CTTAGATATTTTAAAGAGGCATCTATCACATAAGGCATCATTATAACTAA10.5847953216374269No Hit
ACATGGTGAAACCCTGTCTCTACTAAAAATACAAAAATGAGCTGGGTGTG10.5847953216374269No Hit
TCCGTACGCCACATGTCCCGCGCCCCGCCGCGGGGCGGGGATTCGGCGCT10.5847953216374269No Hit
GTTCAATTCTACTCCGTTTTGAAGGATTTTCTCTCTCTTTCTTAGGTGTG10.5847953216374269No Hit
ACCTAAAATAAACAGTTTGCTAGTTTGTGCTTGGAGATTTATAGATTGTA10.5847953216374269No Hit
GAGCAGGATTACCATGGCAACAACACATCATCAGTAGGGTAAAACTAACC10.5847953216374269No Hit
CCCCATAGAAAGCCAAAGACAGGCCGAGCATGGTGGCTCACGCCTGTAAT10.5847953216374269No Hit
CGGCTACAGTGTTCTTCTTTCAGATACAGTAGGATTTATTCAGGATCTTC10.5847953216374269No Hit
GATAAAAAGAGGCATTCCAGCCCCTATGTTATTGATGGAAAAAGAAAAAG10.5847953216374269No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAGACAATCTCAATCTTT10.5847953216374269No Hit
GGTATAATAAGTGGCTTGGAGTCAAGCAAAATTGATAAGATAAACCAGAT10.5847953216374269No Hit
CCCCTAGCCTCTGTCTGAAGTATGGAAGACATTTAGCCTGCAGGCTCATG10.5847953216374269No Hit
GTACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCC10.5847953216374269No Hit
AGACAGGAAATTTGCCAGGCTGCTAATCTTCTCTTGCCTACTCCAGATCC10.5847953216374269No Hit
GTGAAGATATGAAATGAAATCAAAGTGCAACTTGGAATCAATGAAATTGG10.5847953216374269No Hit
TCTTCAAATGGAATGGAATGGAATCATCGCATAGAATCGAATGGAATTAT10.5847953216374269No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTACACAA10.5847953216374269No Hit
CTTGCTCTGTCGCCCAGGCTGGAGTGCAGTGGCGCGATCTCGGCTCACTT10.5847953216374269No Hit
ACGCAGAAGCGCAGCAGGGCCTCTTTCTGGTCGCGCCGCAGTCGGAGCAT10.5847953216374269No Hit
TCTTCGCACAGCGTGGTCTTATCGAGCACAGTGTCGGCTATGAGCGCACA10.5847953216374269No Hit
GTATCAACGCAGAGTACATGGGGAGCTGCCGCTGAGCCGCCGGACGGACG10.5847953216374269No Hit
GGTTGCAGGCTATGGGCGGCTACTAGTAACCCCGTTTTTCCTGTATTATC10.5847953216374269No Hit
GTATTATGTGTTCTTTACCACATTCATTGGTGTTTGTGATAGGTACAGCC10.5847953216374269No Hit
CGATTGAAGCCCCCATTCGTATAATAATTACATCACAAGACGTCTTGCAC10.5847953216374269No Hit
ACCTTTTAGTTGCTCCACATCCTTGTCCAAGCAAGGTCATTCGTTTTGCT10.5847953216374269No Hit
AGCTCGAGGACGGCCTCGTCCTCCATGTCGCGGTAGTTGTCGACGATCAC10.5847953216374269No Hit
GAGTTGAACATTCCCTTTCATACAGCAGGTTTGAAACACTCTTTTTGTAG10.5847953216374269No Hit
TCTTCGTCCTCTATGAGCTCTCGCCCATGATGGTGAAGCTGACGGAGAAG10.5847953216374269No Hit
AGGTAAGACATAATTCCTGGCCCTAAAAAATCTTTCAATCCCATAGAATA10.5847953216374269No Hit
GAGTCCCACAGAGGAGGCTGTTGGAAATAACATCATCTTGTAAACTTTTT10.5847953216374269No Hit
CATACACCAAATGTCTGAACCTGCGGTTCCTCTCGTACTGAGCAGGATTA10.5847953216374269No Hit
GAAGAGGAAACACAAGAAGAAACGCCTGGTGCAGAGCCCCAATTCCTACT10.5847953216374269No Hit
ATCCTTTTCTAATGTGTCTGCACACAGGTTCTAAAGTTTCAGAGGAATCA10.5847953216374269No Hit
GAGTATGTAATGTATGGAAAAGTGTACAGGATTGAGGGAGATGAAACTTC10.5847953216374269No Hit
GGTGTGGCACGTTGCGCAGCTACAGGCTCCGCCGCAATCGGCGGGCAGGC10.5847953216374269No Hit
GGCCGAGATGGCAGATGAGATTGCCAAGGCTCAGGTCGCTCGGCCTGGTG10.5847953216374269No Hit
TACGAGGGTTGTAGTCGTGTGGCACCAGCGCGGCTACTCCGATAGCGACT10.5847953216374269No Hit
GTACTTATACAAGTGTACAGTGACGTTCCACGCTCCCCATCTAACACGGC10.5847953216374269No Hit
GAAGATGGCGGGGCCTTTTGCCGATGAACAGGAGCCTTTGCAGTGACGAT10.5847953216374269No Hit
GCCGAGATCGTGTCGGACATTCGTGTGACGACGTCCAGGGTGCATTGGTG10.5847953216374269No Hit
CACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAG10.5847953216374269Clontech SMARTer II A Oligonucleotide (100% over 25bp)
CCCTGATTCCCCGTCACCCGTGGTCACCATGGTAGGCACGGCGACTACCA10.5847953216374269No Hit
ACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGTGGG10.5847953216374269Clontech Universal Primer Mix Long (96% over 26bp)
GAAAAGAGCAAGAGGAAGATGTGGAAAAAGAAGTTTTTTAACTTCTTTCC10.5847953216374269No Hit
CATATTTGGGTCAATCTTCACTTCCTTCCATTTTCCCACAACTTTGATTC10.5847953216374269No Hit
GCCTATCATCATTAAAGGCAGCGTTGGTGGACTTCTGGTGTTGATCGTGA10.5847953216374269No Hit
CCCTGAGCCGCGCGCGGCTCAGGGAGCGCATAGCCCAGCTGCGAAGCGGG10.5847953216374269No Hit
GGTTCAAGTGATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGATTACAGG10.5847953216374269No Hit

[OK]Adapter Content

Adapter graph