FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003635144

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003635144
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences171
Sequences flagged as poor quality0
Sequence length100
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GAACTGGCGGCCAAGGGGAACCGGCGGAACGAGATCAGCTGGAGCGCACT63.508771929824561No Hit
GCATTTTGGTAGCACTTCTCAATTTGACCTGGACCTTCACACACAGAGTT31.7543859649122806No Hit
ATCCAAATGCGGCATCTTCAAACCTCCATGATGCTGCTTACATGTCTCGA31.7543859649122806No Hit
GACTACGGCTTCCCCGAACGCAAGGAGCGCGAGATGGTGGCCACACAGCA31.7543859649122806No Hit
GCCCTCAAAACCTAGAGAAAAAGGCCAAACACGTCAAAGCTACTTGGGCC31.7543859649122806No Hit
GGGCTTACGCAGAAGGACCTGGCCACGAAAATCAATGAGAAGCCACAGGT31.7543859649122806No Hit
GCCCAAGGTCACAGAGATATTTGCTGAGTAATTCAAACCACAGACATGAA21.1695906432748537No Hit
CAACCATACTCCCCCCGGAACCCAAAGACTTTGGTTTCCCGGAAGCTGCC21.1695906432748537No Hit
GCCAGTGCCTCTGCTTCCGGCTCGAATTGCTCTCGCTCACGCTTGCCTTC21.1695906432748537No Hit
CAGCTAAAAGAGCACACCCGTCTATGTAGCAAAATAGTGGGAAGATTTAT21.1695906432748537No Hit
AGACCCCACTGGTGTGCGGTGGAGCTGATGGCTCTCCAAAGACAGGCCCC21.1695906432748537No Hit
GAATATTTTTTATTCAAAAGTGGAATAACGTAGAATAAATGAATAAACTC21.1695906432748537No Hit
ATTCACCACCATTCGATAACCCTTATTCAGGCCCAGATCAGCAGCACATT21.1695906432748537No Hit
GTAAAAGGGTATTACCGCTTCAGAAAACCTTTTATCAGTTTCTTATAAGG21.1695906432748537No Hit
GCCTACGACGGCAAGGATTACATCGCCCTGAACGAGGACCTGAGCTCCTG21.1695906432748537No Hit
GATTTGCATCCACAATGCAACCACGAACTGATTTTCTCTTTCTTTCTCCA21.1695906432748537No Hit
CAATCTCACTGCTCTTGAAGTTTGTGAGCACTTTCAGCACCACGCCCTGG21.1695906432748537No Hit
AGCCAGCTCATCTGCAGCCGGGTGCCCAGGCAGAAGCCGATCTCCGGGAT21.1695906432748537No Hit
GACCGGTGCTGGGCAGAAATCCGCGGTAGGGATCTTCGGCATAGACCCGA21.1695906432748537No Hit
GGCCAGGGTCACCAAGGTCCTGGGCAGGACCGGTTCTCAGGGACAGTGCA21.1695906432748537No Hit
GTGAAAGCCTGGTGAACAGAAGGAAACCATGTCATGAACATGATGCATTT21.1695906432748537No Hit
CATCAGGCCCCGTCACAAGCCCCGTAGTTGGCCCAGGCATGGGAGCTGGA21.1695906432748537No Hit
ATTGAACAGGAGAAGCAAGCAGGCGAATCGTAATGAGGCGTGCGCCGCCA10.5847953216374269No Hit
CAAAGGAACTTGGAACTGTCATGAGGTCACTGGGTCAGAACCCAACAGAA10.5847953216374269No Hit
GTGTAAGAACAACCAACTCTGCCTCAGGGGATAGTGAGACTGACCTTTCC10.5847953216374269No Hit
TATCAACGCAGAGTACATGGGGACTCTGGCTTCGACTCCGTCGCTCTCAA10.5847953216374269No Hit
GTGCCAAGTTGCAGGGTGGGGCAGGACTCACAATAGTGCATCTTGGTCCG10.5847953216374269No Hit
GTACATGGGTACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAG10.5847953216374269No Hit
CTTCTCGGGTTCCACGAGCTACGACGCGCTCGCCAATGTCGACATCGTGG10.5847953216374269No Hit
GTGCGCATCGAGCTGCGCCATCGTCCGCATCGCACGCGCGTTGTCCCCCA10.5847953216374269No Hit
TATCTAGAGTCACCAAAGCCGCCGGCGCCCGCCCCCCGGCCGTGGCCGGA10.5847953216374269No Hit
CTCATATACTGGATCACGGTGCCACAACATGCTACACGAGGTCTCAGACT10.5847953216374269No Hit
CTGCAGTAGAGGGAAGAAAAGGACAACAGAAACAGTGAAACTTAAATAGC10.5847953216374269No Hit
GGGTACTATAGATGACTAGGTAGGGTCCGGTCCATCGAGGTTGTAGAGTT10.5847953216374269No Hit
GCTCTTAGCTGAGTGTCCCGCGGGGCCCGAAGCGTTTACTTTGAAAAAAT10.5847953216374269No Hit
GTGCTTTTAGTGCTGCTTCCTCCTGAAGGAACATCCTTCTGTAAGCCTTG10.5847953216374269No Hit
TTATACGAATGGGGGCTTCAATCGGGAGTACTACTCGATTGTCAACGTCA10.5847953216374269No Hit
GGCTCACTGCAATCTCTGCCTCCTGGGTTCAAGCGATTTTCCTGCCTTAG10.5847953216374269No Hit
CTCAGATGTTGGGTGTAAGAAATGATGTCTGAGATAAGAAGATCTGACTC10.5847953216374269No Hit
CCCTCAGTAACGGCGAGCGAACAGGGAAGAGCCCAGCGCCGAATCCCCGC10.5847953216374269No Hit
CTATGAAGAAGACCTCCTGTTTGCCACGCTGGACCCGATGACCAGAAAAA10.5847953216374269No Hit
CACTTCACCGACTCCACCCTTCGCGCGTACCGCTTCACCCGAAACCTGTG10.5847953216374269No Hit
TCCTTTACATAACAGACGAGGTCAACGATCCCTCCCTTACCATCAAATCA10.5847953216374269No Hit
ATCTTGAAGAATGTGACATCTTTTAATATCCCTGCAGTTCCTTGGCATGG10.5847953216374269No Hit
TCCTCCAATACATAAAAGGAACTTCCATAGGGCTGGCAGGAGTCAGGCTG10.5847953216374269No Hit
CGCTTTTTGATCCTTCGATGTCGGCTCTTCCTATCATTGTGAAGCAGAAT10.5847953216374269No Hit
CTCTCTCTCTCTCTTTCTCTCTTTCTTTCTGATGGAGGAGTGCAGTGGTG10.5847953216374269No Hit
TACAAATAACATTTAAATAGATCAAAGTGTTTAGAGAAAGATGCAAATTG10.5847953216374269No Hit
ACAAATGAGAACACAGATAAGCCTGAGCACAGATGAAGAGCTTCCAGAAA10.5847953216374269No Hit
GTGAAAGTGTTATACTGAAGCTTTCAATTGATGGCTTTCCCTTACACCAC10.5847953216374269No Hit
TCAACGCAGAGTACATGGGGGCCGATCGCACGCCCCCCGTGGCGGCGACG10.5847953216374269No Hit
CAAAAGAGGATCTCTTCATGGCCAATAAACATAGAAAAAGATGCTCAACA10.5847953216374269No Hit
GCCTGCTGCGTGCTCGGCACCCTGTTGCTACTGACCCTCGGACGAGTGCC10.5847953216374269No Hit
GTCATGGTGCAGCTCCTCTGTCTCCCGGTCCAGCTTGGCCGTGTTCTTGG10.5847953216374269No Hit
GTTTAAGGTGAGTGGGTAAATATGGTTTCTGTTACTCCATCTTGGCTGGT10.5847953216374269No Hit
TGTGTGTCCTGATGCATTCATAGGCTACATGCCGAGAAGTTTCCCTGATC10.5847953216374269No Hit
ATTACCACCTACATAATCCTAGTCAAGTAATTTTTTCTCTCATTTTTAGT10.5847953216374269No Hit
AATTAATACCAATAGAAGGGCAATGCTTTTAGATTAAAATGAAGGTGACT10.5847953216374269No Hit
TTCCATTCGATGATGATTGCATTCGAGTCCATGGATTATTCCATTCCATT10.5847953216374269No Hit
ACGTAATTCCATAAAACTCGGTAGCACCCTGATCCTTTGTCTCCTGTCAG10.5847953216374269No Hit
CAATTGCGTTGCCGGAGGACGCAGGCGAGCGAAGCGACTCTGCAGGTGAT10.5847953216374269No Hit
ACTCCAAGGTCCGGGGGGGTCACTTATCCTGGGCTTCATCCAATGGTGGG10.5847953216374269No Hit
AAATTATAAAGAAGGGCCGATGACCCATAAAAACAATCTTACTGGTCAAA10.5847953216374269No Hit
GCCTTAAGTAAAAAGTAGTAAATAAGTAGGTTGGGCATTGTGGCTCATGC10.5847953216374269No Hit
TATATTGGAAGGCCAACATGGTTGCCTGTACTAGGTGGGTCGCTCCTAAC10.5847953216374269No Hit
GGTGTCAATGCGCACATCTGGAGTTCCCATCTCCTTCATGGCAAATTTCC10.5847953216374269No Hit
ATGTATGGTTAAAAACTAATATTCTACCAACAGCTCCATGCTGCTCTAGA10.5847953216374269No Hit
AATACATGCCGACGGGCGCTGACCCCCTTCGCGGGGGGGATGCGTGCATT10.5847953216374269No Hit
ATCCTACTGTATCTGAAAGAAGAACACTGTAGCCGCTTGGCAGGACCATT10.5847953216374269No Hit
GAAGTCTCCCACCATTATTATGTAAGTTTCTTTCTAGGTTCCTAAGAACT10.5847953216374269No Hit
GGCCAACATGGTGAAACCTCATCTGTACTAAAACACATAAATTAGCCGGG10.5847953216374269No Hit
GTTTTAGGTAACATCTGCGAGAACTGCCACACACTGGTATTTTCAGAATA10.5847953216374269No Hit
GTCTAGGGACAGGAAGATGGTTGGCGACGTGACCGGGGCCCAGGCCTATG10.5847953216374269No Hit
GCCCAGCTAATTTTTTGTATTTTTGGTAGAGACGGGGTTTCACCATGTTA10.5847953216374269No Hit
CCAAGAAGGCGCGCGTCGTGCAGCAGCAAAAGCTCAAGAAGAACCTAGAA10.5847953216374269No Hit
ATATTTAACAAATATCCAGCAAAGGTTTTTCCAGGAGATGTTGGAACTCT10.5847953216374269No Hit
GACCGTAGTATACCCCCGGTCGTGTAGCGGTGAAAGTGGTTTGGTTTAGA10.5847953216374269No Hit
GTCAGAGACAGAGTGGTGAGTCATATGCGTTTTGGGTGCGTCCGTGCGCT10.5847953216374269No Hit
AGTCAGAACTAAAGGAGCTGCTGACCCGGGAGCTGCCCAGCTTCTTGGGG10.5847953216374269No Hit
GTACTTCTGTCTTCCAGTTTTCCACTTCAAACTTCTATCTTCTCCAAATT10.5847953216374269No Hit
CCATGAAGCCCTACTACACCAAAGTTTACCAGGAGATTTGGATAGGAATG10.5847953216374269No Hit
GAGGAAGCACCGAGGGTGACTACGTTGTCTTCCCTAGATCAATTTTCTTC10.5847953216374269No Hit
TCATTTCATTCATTTCATCTTCCATCGCTGATACCCTTTCTTCCAGTTGA10.5847953216374269No Hit
CCTATTCCATTATTCCTAGCTGCGGTATCACAGACCTGTTATTGCTCAAT10.5847953216374269No Hit
ATTCTACTTTGAGTGCTGTCTCCATGTTTGATGTATCTGAGCAGGTTGCT10.5847953216374269No Hit
AGATGTCTCGCTCCGTGGCCTTAGCTGTGCTCGCGCTACTCTCTCTTTCT10.5847953216374269No Hit
CACAACGCACTGCCAGAGCAAAGAGGAAATATTCAGAGGTTGATGATAGC10.5847953216374269No Hit
GGTCCCAGGTCATTCTTGGGGCTCACTCAATAACCAGGGAAGAGCCAACA10.5847953216374269No Hit
GGCCCGAGGTTATCTAGAGTCACCAAAGCCGCCGGCGCCCGCCCCCCGGC10.5847953216374269No Hit
ACGGTGGACAGTGAGCCAGCCCTTCCTCAACAGGTGAGCAAGAGCGGCTG10.5847953216374269No Hit
GTATATTCTGTTGATTTGGGGTGGAGAGTTCTGTAGATGTCTATTAGGTC10.5847953216374269No Hit
CAGCCAAGCTTCTGTGCCTCCTTTTCTGGCCACTGGGAACTCTAAAAAGT10.5847953216374269No Hit
CATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATAC10.5847953216374269Clontech Universal Primer Mix Long (96% over 26bp)
ATTCTTGGCAGGGGAGACCAACTGGTAATCTGTCAATTCCTCAAAGCACA10.5847953216374269No Hit
CAAAAAACAAAAAACAAAACAAAAAAAACCCCAGAATTCCCATGAATCAA10.5847953216374269No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGT10.5847953216374269No Hit
GAGTACATGGGAACGGCACACCGAGATACAATCTTTACCATGCCTCAGAT10.5847953216374269No Hit
GATGATGATCGAGGCGATGGCGTGCGGCACGCCCGTCATCACGACGAGGC10.5847953216374269No Hit
GTACGAATACAGACCGTGAAAGCGGGGCCTCACGATCCTTCTGACCTTTT10.5847953216374269No Hit
GTCTAATGAGCGCAGTTGATTCGAGGAAGTACTAGCCGGACATCATGAGT10.5847953216374269No Hit
ACCGTGAAACCCTGTCTCTACTAAAAAATACAAAAATTAGCTGGGTGTGG10.5847953216374269No Hit
GGCTATTACATCTCTAAGGAATTGGTGAAGTAAAATGGTGAAGCTTATGA10.5847953216374269No Hit
TCGGTGAGCAGCGAACCGGGCTCGACGATGCAGCCGCAGCCCACCACCGA10.5847953216374269No Hit
TCGCTATATAGATCGCTGCAGACTGGGATTTAAGCAGTGTAGCCTTCACC10.5847953216374269No Hit
GTGGTGGCAGGTGTCTGTAATCCCAGCTACAAGAATCCCTTGAACCTGAG10.5847953216374269No Hit
TAATGTGATCCCTTCCGGCGGTCGGTATAAAATCAGGCAGTTTTTGATCA10.5847953216374269No Hit
AGCCAGGTGTGGTGGCACGTGCCTGTAATCCCAGCTACTCAGGAGGCTGA10.5847953216374269No Hit
GTAGAGATGCTGGTGGCAGGGCATGAGGACAGCAATGGTTGTATCAACTA10.5847953216374269No Hit
GCATCAGGCGCAGCAGCTGCACTTGTCCGACGCCCCTTTGCAGATGCAGC10.5847953216374269No Hit
TATGAAGACAATCCCGTTTCCAACGAAATCCTCAAAGCTATCCAAATATC10.5847953216374269No Hit
TCTTTTACTTCCTCAAGCGTTGAGCGGAATGCAGCAATCAATGTCGTCGG10.5847953216374269No Hit
TATCAACGCAGAGTACATGGGACTCGCGACTGACGGAGCTGCGGTGGCGT10.5847953216374269No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT10.5847953216374269Clontech Universal Primer Mix Long (96% over 26bp)
GTACAAGCAGTTAATCACCCACCATAGGGCATGATTAACAAAGCAACCTT10.5847953216374269No Hit
GAGACAGACAATGCAGCCATCATAATGAAGGTGGACAAAGACCGGCAGAT10.5847953216374269No Hit
ACCCAGGAGTCCTCCAAGCAGCCAGATACAGTGTTGAAAAGTTCAACAAC10.5847953216374269No Hit
GAGTACATGGGGCTCTTCTGAGGATCCGGCAAGATGGCAGAAGTAGAGCA10.5847953216374269No Hit
AATTAAAAGCATGTGCTACAGCTCTGTAACCTTACGTCAATTTGACACAC10.5847953216374269No Hit
TTCTCCAGATTAAATCGTCCTGGCTTCAGATATCTAAAGCAGCTATTTTT10.5847953216374269No Hit
ACTCACTGAGGATGAGGTGGAACGTGTGATAACCAGTATGCCGCATAAGA10.5847953216374269No Hit
ATGTTCATGGATTGGAAGAATTAATATTGTTAAAATTAGAGAGAGGGAGA10.5847953216374269No Hit
ATGTAAGATTCATATGGCTTTTCAACTTGCATAAATTCAAAATCATAACT10.5847953216374269No Hit
CAGGTGGGGTTAAGGAAATGGCAATACCTACCCCCGTCCAAATTCCAGTC10.5847953216374269No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT10.5847953216374269No Hit
ATCAACGCAGAGTACATGGGAGGCGGAGCAGGCAGAGGAGCAGGCCAGGC10.5847953216374269No Hit
ACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATC10.5847953216374269Clontech Universal Primer Mix Long (96% over 26bp)
AGCCGATACCGTGAAAGAAGAAAGAAAAACGGTGTTCTTCAAATTGCGCT10.5847953216374269No Hit
GGGTAGAGGGGGTGCTATAGGGTAAATACGGGCCCTATTTCAAAGATTTT10.5847953216374269No Hit
ACCATCGAAAGTTGATAGGGCAGACGTTCGAATGGGTCGTCGCCGCCACG10.5847953216374269No Hit
CTCTTTAACTCTAATAACATTTTCTTTATATATGTTGGTTCTCTTGTCCT10.5847953216374269No Hit
ATGTCAGACGCAGCCGTAGACACCAGCTCCGAAATCACCACCAAGGACTT10.5847953216374269No Hit
GCCCTGCGGGCCGCCGGTGAAATACCACTACTCTGATCGTTTTTTCACTG10.5847953216374269No Hit
ATTTTATACCGACCGCCGGAAGGGATCACATTATGGTCAGTGCGAAATTT10.5847953216374269No Hit
AAATTACCTAGTTGCAGGTATTTCTTTATATGAACACATGACTGACCTGA10.5847953216374269No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAATA10.5847953216374269No Hit
ACACAGGTGAGAATAGGGCTGCTGGTGCATGGCAAGCGCCCTCCACATTC10.5847953216374269No Hit
GTAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAGTACGCAC10.5847953216374269No Hit
ATCAACGCAGAGTACATGGGGGAATTCACACCGGCGCACGCCACAGGCGT10.5847953216374269No Hit
TTCTTGCACAGATTGAACATCTAAAATTCCCCGAGATGCAGCCTCTTTTT10.5847953216374269No Hit
TTTCGGAGTCAGGCCAGACCAGAACATTTTTATTGGTTTAGTCACTTAGG10.5847953216374269No Hit

[OK]Adapter Content

Adapter graph