FastQCFastQC Report
Tue 10 May 2022
EGAF00003635223

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003635223
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences251870
Sequences flagged as poor quality0
Sequence length100
%GC49

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT6810.27037757573351334No Hit
CTTATACACATCTCCGAGCCCACGAGACTACAGTTCCCGTATCTCGTATG5510.21876364791360622No Hit
CTTATACACATCTCCGAGCCCACGAGACTACAGTTCCCGTATCGCGTATG4950.19652995592964626No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT3860.15325366260372414No Hit
GTACATGGGGCAGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAA3580.14213681661174415No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT3170.12585857783777343No Hit
ATACACATCTCCGAGCCCACGAGACTACAGTTCCCGTATCTCGTATGCCG2800.11116845991979989No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)