FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003635439

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003635439
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences41
Sequences flagged as poor quality0
Sequence length100
%GC65

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCGGGGACCTGGGCGGCTTCACCTCGTTCCCGTGGCTGTTCTCGATCTA37.317073170731707No Hit
CTACGCGCTCTACCCGCACCAGCGCGACCAGCTCAGCGGCGCCACGCCGA24.878048780487805No Hit
ATTGGCTGAAATTCTATAATACTGAACGGACTCATCAAGGAAAAATGCTG24.878048780487805No Hit
GTGCGGAACGCGCGGGTCAGGCCGGCGACCTCGATCGGGTCCCCGACCAG12.4390243902439024No Hit
CGGTTGGGCAGAAGGGCGAAATGAGGAACGCCTGCTTCTGCCTGTAGGAA12.4390243902439024No Hit
AGCTCGAGGTGACCACCATCGGGCTGACCGACGTCGGGTTGATGAACGGC12.4390243902439024No Hit
GGACCGACGTGACGATCGACCTCGCCGACGAGGGGTCGACGCGCTTCGCC12.4390243902439024No Hit
TTCGTGACGTCTGCATCGAGTGTCCTTTCGTGGGTGGTGCACAGCGAGTC12.4390243902439024No Hit
GCACACCTCGACGTCGACGACGATCAGGGCGGTGGTCATGGTCAGGCTCC12.4390243902439024No Hit
GCCCGGCACGGCGGCGGCTCCCCGCACGGCGCCGCGAGCACGCCGCACCG12.4390243902439024No Hit
GAGCTTCATGGGCCAGCTTTTTTGTTTTTCTTGGCAAATTTTAATAACTA12.4390243902439024No Hit
GCCGGGCACGATCGGCTACTGCGACGGGCTCTTCAAGGTGCCGCTCGAGG12.4390243902439024No Hit
CGGCCAGCCCGTCGGGTCCGGGCCACGCACGTGCGTCGTACCTCGCGTCG12.4390243902439024No Hit
GTTGCTAACAAGTAAGTCAGAAATCCATACAGCACTAAAGAACCCATAGC12.4390243902439024No Hit
GAAACAATCCGCCGTGCATTATTGCCGCTGGTCGATGGACCTGCCGATAT12.4390243902439024No Hit
CTGTGCATCGGCCGCCGTGGCGGTGGGGTCCGTGACGAAGTTCCGGCCGC12.4390243902439024No Hit
GTGCTCGCCGCCGCGGAGCGGCTGCTCGACCTGACCGGCGACGCCGTCGC12.4390243902439024No Hit
CAGCGGTGTCGACCCCGAGACGCTCGACGCGCTCCCGCAGGAGGCGCCCC12.4390243902439024No Hit
GCTCGAGCTCGAGGCCGAGGCGCTCGCGCATCGCGGAGAGCGTGACCTCG12.4390243902439024No Hit
TCCCCGTGGAAACCTCATCTTGAAGCAGGCTTCCCGCTTAGATGCTTTCA12.4390243902439024No Hit
CCCCCCAGGATCTCGGCGACGTCCTAGAGGAACCGGCGCGGGTCCTCCCC12.4390243902439024No Hit
CTTCGCCGTCCTGCAGCCGGACGCCGGGCTGTTCCCGCCGGTCGCTGCGG12.4390243902439024No Hit
GGCGTATAGTCTGTCCGTGCTACGTAACAATCGAGAGGGCTGGAATTTCC12.4390243902439024No Hit
GCCCATGGGTCCTCACTTGCTTCCGGTGGGAGCGCATGCGCGTCCCAGGT12.4390243902439024No Hit
GAGCGCGGGGCCGGCCGGCCGGCCCCGCGCGCCGCGGCCGTCAGGCGTCG12.4390243902439024No Hit
ATCCGACACTGAGGGCGGCCACCGCGTCTTGGCGTCGGTCCAATGCGTGC12.4390243902439024No Hit
GGGAATAGCAGCCGGAGTCTGAAATCCAATGCAAAATCAGCAAATCCGTA12.4390243902439024No Hit
GTAGGACGCGTTCTCGACGTTGCAGCCCACCACGATGCGGCCGTCGTCGA12.4390243902439024No Hit
GCTCTAGGTAGCAGCCGGTGTCCTCGGAATGTCAGAAGCTTCCTGAAGCG12.4390243902439024No Hit
CTTGTACCCGGCGTAGTGCAGGTCGCTCGCCATCGCGAGGAAGTACGGCA12.4390243902439024No Hit
GTCCGGGCCACGAGCCCGGCGTGGCTGCAGCTGTCCGACGGCACGGTGCT12.4390243902439024No Hit
CCACCACCTGCTGAATCTTTATGCGTCACTTCACCTTTATAGGCAATCGT12.4390243902439024No Hit
AGCTCGCCGCGTCCGTCCAGGAGCACGGCCTGTACAACCAGAACCTCCAG12.4390243902439024No Hit
CAGGGCATGCAATCCGACGGATGACGCGCAGGCAGGTGTACTCAAACGAA12.4390243902439024No Hit
GCACTTACTGGTTTTCCCACAGCTCTGTCAGATTTCACGGATGATTCTTT12.4390243902439024No Hit
GCACGGCGCCCGGCGCGGACGGCGGCACGCAGCCGGGTGACCGCGTCGTC12.4390243902439024No Hit
GATCCGGGATTGGAATGGCGCAGCCTGGTATCTACGCAACGGTGAGATCA12.4390243902439024No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)