FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003635440

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003635440
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences41
Sequences flagged as poor quality0
Sequence length100
%GC65

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCAGGCCCTGCACGGCGCGGAACGCGATCAGCGCCGGCATGGACCACGC37.317073170731707No Hit
CATTTTTCCTTGATGAGTCCGTTCAGTATTATAGAATTTCAGCCAATCTG24.878048780487805No Hit
GTGCGCGACCTGGGCGATCCGGCCGAACGCCTTGCCGGTCCAGTACGTGT24.878048780487805No Hit
TGGCGGACGAGCTCGCCGCCCAGCAGGCCCAGCTCGCTGCGGACCTGGCC12.4390243902439024No Hit
GTAGCGGATGACGACGTCCTCGACCGCGGGGTCGCGGTCCCAGGACACGC12.4390243902439024No Hit
CCGACGCGCTGCGCCTCGTGCTCGGCAACCTCGGCTCGCCGGTGCCCAGC12.4390243902439024No Hit
ACACAGGTGCGCGCCGACGTGAGGCAGGGACGTGACAGAGCTCAGGGTGG12.4390243902439024No Hit
GACCCGGCTGATGCGCGCCATCATCAGAAGACCCGTTGCAGCACGTCGGT12.4390243902439024No Hit
GTAGGTGACGGTGAGCTGCGCCAGCCGAAGGCCTCGTCGGGTCAGGCCGG12.4390243902439024No Hit
CTGTTGTGGCGGCGTTATCGCCAGGAAGCTAGGATGTTTGCGATCGCTTG12.4390243902439024No Hit
CTACGCACGCGCGGCTGCTCGACCGGCTCTGCTCCGCCGCGTCACACGAG12.4390243902439024No Hit
GTTGTATGTTGCGTAAAGATGATCCGCAGTTCAAAAAGCTGATGGATGAC12.4390243902439024No Hit
GCGCATACCATCTTCAAGTGCGCGCAATTGCTCAAGTTTTTCGCGCTTTT12.4390243902439024No Hit
GTCCCTGGCCGAGGTCCGCGCGCACCACCGCGGCGCCAAGGCCGAGCTCA12.4390243902439024No Hit
CTTCCACACCGGCCGCCAGATCGAGCTTCATAAGAGCATCAACGGTTTTA12.4390243902439024No Hit
GCGCAGCGGTGCGCGACCGCGCGGACGCCCCGCCGGGAGCGGCGCCACGA12.4390243902439024No Hit
CTCCCGATCAAGCTCTACGCGTTCGTCACGATGAACAAGCAGGGCTGGCT12.4390243902439024No Hit
GCGGCATGGGGGCCACGCGCCACTTCCCGGCTGCGGCCTCGACGCCGGAC12.4390243902439024No Hit
CTTACACTCGCGGCGTAGGGCGCGCAGAACATTATTATGCTGGTTGGCGA12.4390243902439024No Hit
GTGCGCGCCGATGTCGAGGGTGGCGGCACCGCCGTCGGCGTGCTCGGGGC12.4390243902439024No Hit
GGCCGCCGCTGGCGCTCCCGACGAGACGCCGGTCACCAACCACGACCTGC12.4390243902439024No Hit
GACGGACACCGGCGAGCGCGACCAAGCCGGAGACAATGAGTTTGGGCTTA12.4390243902439024No Hit
ACCATGGACTCGCCGTCGAGGATGACCGGGCCGCACGTCTCGGCCCCGGC12.4390243902439024No Hit
ATACAATCCAGGCTTGTTTTGCTCGCAGAAACTCGTGTGTGTTGAAGACA12.4390243902439024No Hit
CTCTTGAGGGGATGGTGATTTTTGGTACCACAAAAAATAGAAGATGTATT12.4390243902439024No Hit
GGGTAGTACACGCGCCCGATCTTGCCCTCCTTGCGGATCTCGATCTTCGA12.4390243902439024No Hit
GTGTCGGCTCACATCCGCACCGTGGTTTTGAAACAGTGACGATTGCCTAT12.4390243902439024No Hit
TGCTGCGGGTCAACTACATGGCGTCGATCGCGTGGGCGAGCTTCGGCCTG12.4390243902439024No Hit
GCAGCGCACGGGCCGGTGCGTCGCCGCGTCCCCTCGTGATCGCGTAAGGT12.4390243902439024No Hit
GAACCCGGTCCTCTACCGGGACGCTAAGTTCGAGCACGACCACGCGAGAG12.4390243902439024No Hit
CATCTGGAGATCCTCGCTATGATGTGGCAGATGCAGTAAAAACCCTGAAG12.4390243902439024No Hit
CCTCAAGCGGCTGGGTGACGCGCGTGCCGACGGCGACCACGTGTACGCGG12.4390243902439024No Hit
CATGACGGTCGCGCGGCTCGACCCCGTCCTCGCGACCGAGATGGGCGTCG12.4390243902439024No Hit
CCTATCCGCTGCGCGCGCAGGAAACTTGAGAAGGGCTGTCCCTAGTACGA12.4390243902439024No Hit
ACCGGGGGAGGGCTCCGAGGGGGCGGGGTCCGACGGTCCGGGCGCGGGCT12.4390243902439024No Hit
AGCGCCTCCCGGGGACCCGGTTCGCTGTCGAGCGTCGCGCCGGGATCGCC12.4390243902439024No Hit
TCCCGGAGCTGCGCGGGACCGCGTTCGAGACCGGCTACCTGCGCGCGGCC12.4390243902439024No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)