FastQCFastQC Report
Tue 10 May 2022
EGAF00003635443

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003635443
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences370581
Sequences flagged as poor quality0
Sequence length100
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTACATGGGTACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAG5990.16163807642593658No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT5410.1459869772060629No Hit
CTTATACACATCTCCGAGCCCACGAGACCCAAAGTCCATAATCTCGTATG5230.14112973951713662No Hit
GCCTAGTACTGTGCGCCAATTAGGTCGTCATTGCGCCAGCTCGTCAGCGC5060.136542348366484No Hit
GTACTAGGCATCGTCATCCAATGCGACGAGTCCTACACTATCTTGGATAT4770.12871679875654715No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT4170.11252600646012613No Hit
GTATAAGGTGATCGCAGGTTGTGCAATCATTGCTCAAAAGGGTGTACACC4080.11009738761566298No Hit
CTTATACACATCTCCGAGCCCACGAGACCCAAAGTCCATAATCGCGTATG4070.10982754107738929No Hit
GTATACGGGCGTCGGCATCCAGACCGTCGGCTGATCGTGGTTTTACTAGG4000.10793861530947352No Hit
GTCCTGTATTGTTATTTTTCGTCACTACCTCCCCGGGTCGGGAGTGGGTA3890.10497030338846298No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)