FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003635572

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003635572
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences47
Sequences flagged as poor quality0
Sequence length100
%GC70

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGACCACACGCCGCAGGGCAGGCTCGTCACGCATCCGTTCCAGCTGGACC36.382978723404255No Hit
GTGCAGCGGATGGTCATCGCCCGCGGCCTGGGGCTCCCGGCGAGCTGACG24.25531914893617No Hit
GGTACGGCCGTCCTGGTGGCCCATCGTCCCGGGTAGGTCACAGTTTGGTG24.25531914893617No Hit
CCGCCACCGTGCAGCCCGGCGTCGTGCTCGGCCACCTCGTCTCCGCGGCG24.25531914893617No Hit
GTCTCCGGGACCTCCCGGCCCGCAGCGCCCCGTGCGTGGTGCGGACCTAC24.25531914893617No Hit
GCCCACGTCCGCGACCAGCTCCTCGCGCTCCTGGACCGCTACGACATCGC24.25531914893617No Hit
GGCCTATCCGGACAGCTCTCGTGCCGCACGGGTCGGCCGCTTCAAGGCAT24.25531914893617No Hit
CCCGGGCGCCCGGTGGCCGAGGACTTCGCCGGCAGCGGCGGCGGCACGGC24.25531914893617No Hit
GACCTGCACCGGGTGCGCAGGGTGCCGGTCGTCGCGATCGCGACGAAGTC24.25531914893617No Hit
CCCCCGCAAGCTTCCAGCGTCGGCTGTGCTAGGACCGCCTGTGCGTAGAG12.127659574468085No Hit
CTCCACCATCATCCGCCAACCGACTCATCAGACGCACGGTTTTGCCGCGC12.127659574468085No Hit
TGTAAATAGTGCCCTTGAAAATTTGCTAAAGGAAAAAAATAAGACTAACT12.127659574468085No Hit
CGCCGGGTCCTCGTCAGTGAGTGCCTCGTCGAGCGCCCGCAGCGTGGCGT12.127659574468085No Hit
CAGGCCCGGGCCGCCAGCGGTGGGCGGCTCACGCCGGAGCTGCTGCGGCT12.127659574468085No Hit
GCGATGAAGAGCTGGTCGTTCTCGATGCGGGCGTGCGCCGCGTTGGCCAT12.127659574468085No Hit
CGTGGAGGGCAACCGCAGGCTCACCGCACTGCTCGGTCTCGCGGACCCAG12.127659574468085No Hit
GCCTTCGCCGCCGTGCTCATCGCGCATGGTGAGGCCGAGGAGGAGAAGGT12.127659574468085No Hit
GGCCACGACCGTGCACGTTGGCCGCCAGCGCCCCGCCCAGGCTCAGCCGG12.127659574468085No Hit
GTGTCGTCGCGGAGAAGGTGCGCAACCTCACCCCGGGCGAGGGCCTCAAC12.127659574468085No Hit
CCCCGGACCGGGGAGCACCAACGCCAGGATGCCGGCCACCAGGACGACCC12.127659574468085No Hit
GCCCTGGACGGCACGGAGAACCTCGACGGCCACGACGGGGTCGTCGAGCT12.127659574468085No Hit
CTACTCGGTCTACCAGAAGATGATCGTGCGGGGGCACGACTTCGAGAAGA12.127659574468085No Hit
GCATACTGCCGATGACAGCATGGATCGGATGGTATTCCGAACCATAGCCC12.127659574468085No Hit
CCTGGTGGGAGGGGGTCTGACGCAGAACGGGCACCGGTCTCCCGGTGCCC12.127659574468085No Hit
GCCGATCGGTGCGCACGTCACCCTGCGCGGCGACCGCATGTGGGAGTTCC12.127659574468085No Hit
GGGTGGAGCTGGCCCTGGGCACATCTCGGCTGGGTGTCTATGCCGGGCAG12.127659574468085No Hit
GACGAGGGAGCGTTCGGTCTGGGCGGCAGTCGTGTCGGTCACGGACCCAG12.127659574468085No Hit
TCGCCACGCTCGGCCTGGTGCTCTGGGCCCGGCCAAGGGGGCTGGCGATT12.127659574468085No Hit
GTGGAGTACCTCTGGTGGCTCCGGCGGTGCGCCCACCCGGGAGCCTGCCC12.127659574468085No Hit
GTCGGGGGCAGCACCTACGGCGTCGCCAAGGGGACCACCCTGGTGCCCGT12.127659574468085No Hit
GCTCCCCGGCGAGCACGCCATCGTGCCGGTGATGTTCCCCGGCGACGACG12.127659574468085No Hit
CCAGGATACCGCGAATCCACCCGCAAATCAAACATATGTTCGAACGATCT12.127659574468085No Hit
TACCACGACCGCTCCGACGGTGGTCTCTGGGCGACCCTGTGCGAGATGGC12.127659574468085No Hit
CTGCACCGTCCGGCGGGAGGCGGCATCGAGTTCGGCGAGACCTCCGAGCA12.127659574468085No Hit
GATCGGGGTCGAGCACCACCTCGGTCTGACCTGCGACCCCGTCCGCGGGC12.127659574468085No Hit
CCGTGCAGGAGGTAGCCCACGAGGAGCCAGACGAGGTAGGCGAGCGCCGC12.127659574468085No Hit
GCCGGAGAGGTTATGCAAAATATTTGTGTCGAGAACGACACGAATGGCAT12.127659574468085No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)