FastQCFastQC Report
Tue 10 May 2022
EGAF00003635633

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003635633
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2660850
Sequences flagged as poor quality0
Sequence length100
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCTTAGGGGTTTTGTTTTTCTCTTTTGAGAGAGGCCATCATTATCATTG44860.16859274292049534No Hit
CCGTAGAACTGATGCTTGCAGAACGCAGTCTCTTAGGGGTTTTGTTTTTC32700.12289306048818988No Hit
CTCCAAGGGCTTCCCGTCGGGACCATGCGCGGCCGTGAGCTCCCGCTGGT31050.11669203450025369No Hit
CTCCAAGGGCTTCCCGTCGGGACCATGCGCGGCAGTGAGCTCCCGCTGGT29170.10962662307157486No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT28800.1082360899712498No Hit
GTCAAATATTTTGCACAAGGAAATCTTGTTGATGATCCGTAGAACTGATG28530.10722137662776933No Hit
ATACAGAATAGTCAAATATTTTGCACAAGGAAATCTTGTTGATGATCCGT27690.10406449067027453No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)