FastQCFastQC Report
Tue 10 May 2022
EGAF00003635634

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003635634
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2660850
Sequences flagged as poor quality0
Sequence length100
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCTTAGGGGTTTTGTTTTTCTCTTTTGAGAGAGGCCATCATTATCATTG45810.1721630306105192No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG45670.17163688295093674No Hit
ATACAGAATAGTCAAATATTTTGCACAAGGAAATCTTGTTGATGATCCGT32230.12112670763102017No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT31750.119322772798166No Hit
GTCAAATATTTTGCACAAGGAAATCTTGTTGATGATCCGTAGAACTGATG28970.10887498355788564No Hit
CCGTAGAACTGATGCTTGCAGAACGCAGTCTCTTAGGGGTTTTGTTTTTC28110.10564293364902194No Hit
CTCCAAGGGCTTCCCGTCGGGACCATGCGCGGCCGTGAGCTCCCGCTGGT27670.10398932671890561No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)