FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003635965

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003635965
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences108
Sequences flagged as poor quality0
Sequence length100
%GC46

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCTGGTCCCGCGCGCCAGCATGGGAGAGCGAGGGACCTGCCCGCGGCCC32.7777777777777777No Hit
ATTGAAGACCTTGCCGCATTTATTACATTTGTAAAGTTTCTCTCCAGTGT32.7777777777777777No Hit
CTACACTTTTTTTTTCGTCGGCAAAAAAAAAAAAAAAAAAAAAAAAAAAA21.8518518518518516No Hit
GGACTACAGGCGCCCACCACCACGCCCAGCTAATTTTTTGTATTTTCTAG21.8518518518518516No Hit
GTAAAATGTAATAAGTAGTTTCTGCCTATATTAAATATTTGATGGAAGGA21.8518518518518516No Hit
TGTGATGTGTGAACTCAGCTAACAGAGGTGGATCTTTCTTTTGATAGAGC21.8518518518518516No Hit
GGAATGAAATGCAATGGATACAACTCGATTGCAATGGAATGGAATAGAAT21.8518518518518516No Hit
CATTTCTCCCTAATCTTTAAGTTTACCCAGAATACCAACAGAGATCTGCA21.8518518518518516No Hit
GTGCCCCAAGTACAGATCCCATTACTTCTGCTTTCGTATCTCCTCAGGCA21.8518518518518516No Hit
ATTATTTGCCATTAAAAGTAAATCTAGAACAGATGGGGTCATGAAGAACT21.8518518518518516No Hit
ATGCTGAAAAGGTGGCCACTAGAGGTCTGTGTGCCATTGCCCAGGCAGAG21.8518518518518516No Hit
GTACTCCTGCTTGCTAATCCACATCTGCTGGAAGGTGGACAGTGAGGCCA21.8518518518518516No Hit
CGGAAATTCTAGCACTTCAGGAGGCCCGAGGCAGGCAGATCACTTGAGCC21.8518518518518516No Hit
TTATTATTTTCGCTGTCGTGACTACACAGAGTTACTGGCACAAGTTTATC21.8518518518518516No Hit
CTATAAGTGTTAGCTACAAATGTTATCCTGTAAGTGTTACTATAAATTAT21.8518518518518516No Hit
CGCTTGGTGAATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGA21.8518518518518516No Hit
TACGAAACCCCGACCCAGAAGCAGGTCGTCTACGAATGGTTTAGCGCCAG21.8518518518518516No Hit
TGAGTGAACTGTTTTCTTATCGTAAAGTAATTAGAGTATTTTCTGAGGTA21.8518518518518516No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT21.8518518518518516No Hit
AGTCATAGTGGTAAGATACCTTAGCAAACTAAAAGCCATTTATGACAAAC21.8518518518518516No Hit
TTCCTTCAGTTCTTTGACTATCTCATCCTATTCTCTCCTGTCCTTTAAGG21.8518518518518516No Hit
TTACTAGAGGGTAGAGCCAGCCTCCGTTACACCAGGGCATGTGATGGCAT21.8518518518518516No Hit
CATGGAAAGCAGTGGTATCAACGCAGAGTACATGGAAAGCAGTGGTATCA10.9259259259259258Clontech Universal Primer Mix Long (96% over 26bp)
ACACTACGAGCCACAGCTTAAAACTCAAAGGACCTGGCGGTGCTTCATAT10.9259259259259258No Hit
ATGCCCTGGTTGAGCCTCAAATGACGAAAACTTGTGTCAACACCAGGAAT10.9259259259259258No Hit
ACTCCCACCGCGAATCCAAAACATACACGTCGTGTCTGCGAGTGGAGGTG10.9259259259259258No Hit
GCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCC10.9259259259259258Clontech SMART CDS Primer II A (96% over 26bp)
AAGTAGGAGAGGAGCGAGCGACCAAAGGAACCATAACTGATTTAATGAGC10.9259259259259258No Hit
ATCACAGACCTGTTATTGCTCAATCTCGGGTGGCTGAACGCCACTTGTCC10.9259259259259258No Hit
GAGTAGCAGATTCCATCAGGGAGGCCACATGTGGATTTAAGCAGATAATT10.9259259259259258No Hit
TCAGGGTCCTCTGCACTGCTGCCATGTCTTTGCCTTCAAAGAGGTCAACA10.9259259259259258No Hit
GTGTGTGTGTGTGTGTGTGCATGTGTGTATGGAGGCTTCCTGGAGGAGGG10.9259259259259258No Hit
ACTTTGAGGAATGCAGTGTAGGTGTATGTCCGACAAAGAAAACAATAATT10.9259259259259258No Hit
GTTCTGATCCAAGATATCATAGGTGAGAAAATCCACAAAGGTGAGCTTTT10.9259259259259258No Hit
CCCCAACTCCAAAGCCAAAGCTCAGATGCTGTTTATCATCACACTTGCCC10.9259259259259258No Hit
CAACCGTAAGCCCAGTTGCCCCGGTTCTGAAGCTCGCCTGGGGTGAAGGC10.9259259259259258No Hit
GGAAAGCAGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA10.9259259259259258Clontech Universal Primer Mix Long (95% over 22bp)
GGCAGTGGGTGACTGCTTGACTTTAGGGTTCAGTCTGGCAATAGCTTTGT10.9259259259259258No Hit
CATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCA10.9259259259259258Clontech Universal Primer Mix Long (96% over 26bp)
TTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACC10.9259259259259258No Hit
GTACGAATACAGACCGTGAAAGCGGGGCCTCACGATCCTTCTGACCTTTT10.9259259259259258No Hit
CCCTGTAAGTCCAGAGATAAGAATTTCATTTTCAATGTCGTCTCCAAGAG10.9259259259259258No Hit
GTTAGGGCAGCGTCTGAGGAAGTTTGCTACGGTTTCGCCTTGACCGCGGG10.9259259259259258No Hit
TGGCAGTGCCAGTAAGCTCAATCACTTTTTGCCTTTTCAAATCTGCTTCA10.9259259259259258No Hit
CACTCTTAATCATGGCCTCAGTTCCGAAAACCAACAAAATAGAACCGCGG10.9259259259259258No Hit
TGATCCACCTGCCTCAGCCTCCAAAAGTGCTGGGATTACAGGTGTGAGTC10.9259259259259258No Hit
TAACTGGCTTGTGGCGGCCAAGCGTTCATAGCGACGTCGCTTTTTGATCC10.9259259259259258No Hit
GGCTGCGGGGCATCTCGACAGGCTCGACCAGCGGCGCCCAGGTCCGGCCC10.9259259259259258No Hit
ATCACTAGCTACTTGGGACACAGGCACCAACAATGACAATGGTGCCAGGT10.9259259259259258No Hit
GACTTGTAACACTCTTTTTGTGGAATTTGCAAGTGGAGATTTCAGCCGAT10.9259259259259258No Hit
GACAATAACAAACTCGATATCTTCAAGAAGATACGTTCCTTGTGGGTAAA10.9259259259259258No Hit
GATTAATGCAGGGACAGTATCAAGTGTCCTATGATGCTCAAATACTTAAC10.9259259259259258No Hit
GGGTTTAGACCGTCGTGAGACAGGTTAGTTTTACCCTACTGATGATGTTT10.9259259259259258No Hit
GTCTAACGCCTACCAGTACTGATTGCCGAGCAAATCTGTGAATGGCGACT10.9259259259259258No Hit
GGGTAAAACTAACCTGTCTCACGACGGTCTAATCCCAGCTCACGTTCCCT10.9259259259259258No Hit
TTACTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACC10.9259259259259258No Hit
TTTCGGACGCGGCGTGGGGGGGCGTGCCGTTTACCGACCCGCAAAAACAC10.9259259259259258No Hit
CCCTAAGAAAGGAATATGACATTCTACTTAAAATAACTGTGGAAAGAAAA10.9259259259259258No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT10.9259259259259258Clontech Universal Primer Mix Long (96% over 26bp)
AACATGAACGTTGGAGTTGCCCACAGTGAAGTGAATCCAAATACCCGTGT10.9259259259259258No Hit
AAATAGAGGTCTGTGCAGACTTTTTATATTCATATTTTCAGTTTTAAAAA10.9259259259259258No Hit
GGCTCGTAGTGTTCTGGCGAGCAGTTTTGTTGATTTAACTGTTGAGGTTT10.9259259259259258No Hit
GGACAGAAACCTCCCGTGGAGCAGAAGGGCAAAAGCTCGCTTGATCTTGA10.9259259259259258No Hit
ATCCTGCCCGCCATCATCCTAGTCCTCATCGCCCTCCCATCCCTACGCAT10.9259259259259258No Hit
AAGCTGGTGATCGTTGGGGATGGTGCCTGTGGGAAGACCTGCCTCCTCAT10.9259259259259258No Hit
CCCCAAAGAATACTACAGTATAGGGTTAGAACCTTGAAATTGCACCTAAT10.9259259259259258No Hit
CAAGGCCTCCAGGCAAATAGGATTATAGATAAGGATGGTTAGATACTTCT10.9259259259259258No Hit
GATACCACTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGT10.9259259259259258Clontech Universal Primer Mix Long (96% over 26bp)
GAGACAGTGGATGAAATGGAGTTCACCGAGGCGGAGAGCAACATGAACGA10.9259259259259258No Hit
TATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCATAGTACATGG10.9259259259259258Clontech SMARTer II A Oligonucleotide (96% over 25bp)
GGCTGGAATGCAATGGCACAATCTTGGCTCACTGCAACCTCCACCTCCCA10.9259259259259258No Hit
GTCTCACTCTGTCTCTCTTGTCACCCAGGCTGGAGTGCAGTGGCATGACC10.9259259259259258No Hit
GGCATGCTAACTAGTTACGCGACCCCCGAGCGGTCGGCGTCCCCCAACTT10.9259259259259258No Hit
GTCAGGGACTGTTACTCCTACCTCAGCCACACCTGCTGAGTTTACCACCA10.9259259259259258No Hit
CTCTAAATCCAAACCATTTATTATCTCTGAAGTCTAGTCTGCCAGCAGTT10.9259259259259258No Hit
GGCTGCGGGGCATCTCGACAGGCTCGACCAGCGGCGCCCAGGTCCGACCT10.9259259259259258No Hit
CTTTGAAGAGAGAGTTCAAGAGGGCGTGAAACCGTTAAGAGGTAAACGGG10.9259259259259258No Hit
TATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACTTTT10.9259259259259258Clontech Universal Primer Mix Long (96% over 26bp)
GTTTAGTTTGAATCCAGCCAAGTTAACTACCTGCTATACAAGTTTAAATA10.9259259259259258No Hit
ACCCCAGGCTGCCGCCGGCGGGCTCGGGCATCCTCGGTCCGGTGGTGCAG10.9259259259259258No Hit
GTTGAAGGTAGTTTCGTGGATGCCACAGGACTCCATGCCCAGGAAGGAAG10.9259259259259258No Hit
ACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATACAAATGC10.9259259259259258Clontech Universal Primer Mix Long (96% over 25bp)
GAGAAATGCAAACCAAAACCACAATGAGATACCATCTCACACCAGTTAGA10.9259259259259258No Hit
CGATGGCCGTGGACGAAGCGCCACTGGCGACGGCGCCCTCGCCCATGGCG10.9259259259259258No Hit

[WARN]Adapter Content

Adapter graph