FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003635966

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003635966
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences108
Sequences flagged as poor quality0
Sequence length100
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTACATGGAAAGCAGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAA32.7777777777777777Clontech Universal Primer Mix Long (95% over 21bp)
GCTCTTCAATCGAATTTCACTCCTTGCACGACATCAGAGAATACATACTG32.7777777777777777No Hit
CTCCAAACCCAATGGTAACTTGAACTTCAATGGAGAAGAGAAAAGCAGAA32.7777777777777777No Hit
GTAGTCGCCGTGCCTACCATGGTGACCACGGGTGACGGGGAATCAGGGTT21.8518518518518516No Hit
AGCTAGGACTACAGGTGCGTGCCACCACGGCCACATAATTCTTTTTGTAG21.8518518518518516No Hit
TCTCTGGAGAAGAGCTACGAGCTGCCCGATGGCCAGGTCATCACCATTGG21.8518518518518516No Hit
GAACAGAGCCTTGCAGTGGTCTTTTGCTACCTGAGTGACAGGTGTATAGG21.8518518518518516No Hit
ACTGAGTCCTCATCTGCCTTCAAGGGCTCTGTTCGCTGCTCCAGGGTCCC21.8518518518518516No Hit
GGGAGGACAGAAACCTCCCGTGGAGCAGAAGGGCAAAAGCTCGCTTGATC21.8518518518518516No Hit
ACTCTGGGCTAATTCACTCATGATAGAGGTGGGAGGCGATGAAGGTGTGA21.8518518518518516No Hit
CTCAGAAACTGCTCTGTCAAAAGGAAGGTTCTTCTCTGTTAGGTGAGTGC21.8518518518518516No Hit
GGCCGCCCCCCCCCTCCACGCGCCCCGCGCGCGCGGGAGGGCGCGTGCCC21.8518518518518516No Hit
CCTGTATGTAAACCAATGATAAAAATGTTGAACAAAAGAAAACCCTTTGA21.8518518518518516No Hit
GTGTATAGAAATACTACTGATTTTTGTATGTTGATTTTACATTTTGCAAC21.8518518518518516No Hit
ATTCCATTCCATTCCATTCCATTCCATTCCATTCCGGATGATTCCATTCC21.8518518518518516No Hit
CCCATTTATATGATGACATTTTTCTCTTGCCATTTTTAGAATCTTCTCTT21.8518518518518516No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT21.8518518518518516No Hit
GTCTAGGAATTCTGGGGAGCCGAATGAGTGGCCGCATCAGACACTCTGAC21.8518518518518516No Hit
CTCACTATGTGTGCCTATTTCATTCAACAGTCATTTGTGGATGCTGGTGT21.8518518518518516No Hit
GTTAAAATTACAGCTAATCTGTGATTATTTGCAAGGCTGATCATTTGCTG21.8518518518518516No Hit
GGATCATCAGGCCATCCACAAACTTCATGGATTTAGCCCTCTGTCCTCGG21.8518518518518516No Hit
GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAAAGTACATG10.9259259259259258Clontech SMARTer II A Oligonucleotide (96% over 25bp)
CACATTTTGGGTTTACGAATCTTTGAGTTGGTGAATGCCTTTAAGCCCAT10.9259259259259258No Hit
CCCTATTAGTGGGTGAACAATCCAACGCTTGGTGAATTCTGCTTCACAAT10.9259259259259258No Hit
ATGTAATATGTTTCTATTCATTTGGCTGAGTTCCTGTGAACAGTTTGTCA10.9259259259259258No Hit
GTGCCTCGCTGGATGAGAGCCCGCTGGCAAGCACCGCTGATGCACCTGCA10.9259259259259258No Hit
TGGTTTTGGTGGACCCATCACCGCCTTCGCAGTTTATTCCTGGTGTTGAC10.9259259259259258No Hit
GTTTAGGATGAAGTGAGTTGGATCATACTTCGTATAGAAACTTGCCAGAA10.9259259259259258No Hit
CAACGAAGGCCTCAAAGAGGTCTGAATATCCACTTGCAGACTTTACAAAC10.9259259259259258No Hit
CTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACG10.9259259259259258No Hit
GCTGAGCAAATTGCTATCACTGCTGGGTGCAAAACCACCACCTCTGCTGT10.9259259259259258No Hit
TATCAACGCAGAGTACATGGGAAGCAGTGGTATCAAGCAGAGTACATGGG10.9259259259259258No Hit
CTCTCAGAGTTGGTTTTTACTGAGTTGTCTTTTTCCTTGATTATTGTCAT10.9259259259259258No Hit
GTTTCAAGGCACTCTAGATTCCATTGGTCCAAGATTCCGGATCCTAAGCA10.9259259259259258No Hit
CAATTAAACCAGTGCACCATTCAGGGCCATAGGGTAGGAGGCACCAGGGT10.9259259259259258No Hit
GTATATAGGCTGAGCAAGGGGTGGTGAGGTTGATCGGGGTTTATCGATTA10.9259259259259258No Hit
CCTTACTTGTTAGAAAAAAAGGTTCTAAAAAGCCAAAATAGTCCAATAAG10.9259259259259258No Hit
GTTATTGCTCAATCTCGGGTGGCTGAACGCCACTTGTCCCTCTAAGAAGT10.9259259259259258No Hit
GAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGG10.9259259259259258Clontech Universal Primer Mix Long (96% over 26bp)
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA10.9259259259259258No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA10.9259259259259258No Hit
AGTCCCAGCTACTTGGGAGGCTGAGGCAGGGAGAATTGCTTGAACCTGGG10.9259259259259258No Hit
TGTTTTTGCGGGTCGGTAAACGGCACGCCCCCCCACGCCGCGTCCGAAAC10.9259259259259258No Hit
GGGAAGGTGGGTGTGGGTTCCAGTTCCTTCTTTGGCTGATTCTCTTTTGG10.9259259259259258No Hit
AGGCTGAGGCAGGAGAAATGCTTGAATCCAGGAGGCGGAGCTTGCAGTGA10.9259259259259258No Hit
GAGTGCCAGACGTAGGAACCTATATCACCTCCACTCGCAGACACGACGTG10.9259259259259258No Hit
GCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGT10.9259259259259258Clontech Universal Primer Mix Long (96% over 26bp)
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGA10.9259259259259258No Hit
GTATAAGGTGATCGCAGGTTGTGCAATCATTGCTCAAAAGGGTGTACACC10.9259259259259258No Hit
CATGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTATCAAC10.9259259259259258Clontech SMARTer II A Oligonucleotide (100% over 25bp)
GGTCCTTCTTATTCCCCACCAGGATGATGGGCACGTTGGGGCAGAAGTGC10.9259259259259258No Hit
CAGGGATAACTGGCTTGTGGCGGCCAAGCGTTCATAGCGACGTCGCTTTT10.9259259259259258No Hit
TGAACTCATCCTTTTTTGTGGCTGCATAGTATTCCATGGTATATATGTGC10.9259259259259258No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA10.9259259259259258Clontech SMARTer II A Oligonucleotide (100% over 25bp)
TCCTGCTCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAG10.9259259259259258No Hit
GTCGGACCTGGGCGCCGCTGGTCGAGCCTGTCGAGATGCCCCGCAGCCCT10.9259259259259258No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGC10.9259259259259258No Hit
GGTGTGGTGGCACGTGCCTGGGAGTCCCAGCGACTTGGGAGGCTGAGGTG10.9259259259259258No Hit
ACCTTTAGCAATAAACGAAAGTTTAACTAAGCTATACTAACCCCAGGGTT10.9259259259259258No Hit
GGGAGAGGGGGTGCAGCCCACAAAGCCAGAGGGTGGCAGTGATGGCAAAG10.9259259259259258No Hit
GGCTAAGTCTTTGCTGGACATTTAGTCAATTGATCATCGTTTTTAAAACT10.9259259259259258No Hit
CTGTAATTGGAATGAGTCCACTTTAAATCCTTTAACGAGGATCCATTGGA10.9259259259259258No Hit
ACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATC10.9259259259259258Clontech Universal Primer Mix Long (96% over 26bp)
GTTTGTGTGGCAATGTACGTGGGCAGAAGAGGCCGCTCAAGCTGTGTCCC10.9259259259259258No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAGGCCACCGACACGGC10.9259259259259258No Hit
GCCGGGACCTGACTGACTACCTCATGAAGATCCTCACCGAGCGCGGCTAC10.9259259259259258No Hit
TTCTTGCTTAGTACCATTAGAGATATCGATCAGAATCTTGACGTGCCTGC10.9259259259259258No Hit
ATTATGTTCTGCTTGCCCGTGGTTCTCTGCCCTCCGATGAGATGCCTAAC10.9259259259259258No Hit
ACGCAGAGTACATGGGGAGTCCTCGAAGGCTCGGAAGCCCGTCACCATGT10.9259259259259258No Hit
TGTCAGAAAAGTTACCACAGGGATAACTGGCTTGTGGCGGCCAAGCGTTC10.9259259259259258No Hit
GGCCTGCCCGGCACCGCCGGGATCGGCGGCACCGTGCCTTCCTGCTTCCA10.9259259259259258No Hit
CCCAAGCTGTTCTCAAAAAAAGAAGAAAAAGAAAAGAAAAGAAAAAGAAA10.9259259259259258No Hit
CCATAAGGCTGGCCAAGATCACCAAAGGGAGTGAGTGTAAAAGGAGGGGA10.9259259259259258No Hit
GGGTTTCTGTTCCCAACCGGAAACCAACTGCACCCGCTGATCACGTTCGG10.9259259259259258No Hit
GTGTACACCCTTTTGAGCAATGATTGCACAACCTGCGATCACCTTATACA10.9259259259259258No Hit
ACCGTGCCTGGCCTTCCTTTTGGCATTTTATGATCCGTAACTCCAGATTC10.9259259259259258No Hit
CGAAAGAAATGGTAAAAACACAAAAAAAAAAAAAAAAAAAAAAAAAAAAA10.9259259259259258No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTAAGAGGCGTTGATACCAC10.9259259259259258No Hit
GAGTATGGTTGCAAAGCTGAAACTTAAAGGAATTGACGGAAGGGCACCAC10.9259259259259258No Hit
GATTTCTTCTTTAACTGTTTTTCAAACTTTTCCTTATTTCCTTCCAATTG10.9259259259259258No Hit
GACCGTGGGCGCTTGGGCTTCCAGGTCTGGCTGAAGAATGGCGTGATTCT10.9259259259259258No Hit
GCTCATGAGTGCAAGACGTCTTGTGATGTAATTATTATACGAATGGGGGC10.9259259259259258No Hit
GTCGGACCTGGGCGCCGCTGGTCGAGCCTGTCGAGACCATCCGCAGCCCG10.9259259259259258No Hit
GTATAGAATATATAATAGCAGTAGCAGCTCTGTTTACGGAGCATTAACCT10.9259259259259258No Hit

[WARN]Adapter Content

Adapter graph