FastQCFastQC Report
Tue 10 May 2022
EGAF00003636025

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003636025
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences305139
Sequences flagged as poor quality0
Sequence length100
%GC46

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT13170.4316065792966484No Hit
CCCCTATACCTTCTGCATAATGAATTAACTAGAAATAACTTTGCAAGGAG11960.39195251999908237No Hit
CTTATACACATCTCCGAGCCCACGAGACAGCATCTTACGGATCTCGTATG6700.21957206387908462No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT6240.204496966956043No Hit
GCATAATATAGCAAGGACTAACCCCTATACCTTCTGCATAATGAATTAAC5010.16418746866182296No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT4840.15861623719026413No Hit
ACCTTAGCCAAACCATTTACCCAAATAAAGTATAGGCGATAGAAATTGAA4640.15206184722372426No Hit
ATATAGTACCGCAAGGGAAAGATGAAAAATTATAACCAAGCATAATATAG4120.13502043331072067No Hit
AGATATAGTACCGCAAGGGAAAGATGAAAAATTATAACCAAGCATAATAT3990.1307600798324698No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA3640.11928989739102508No Hit
GATTTAGAGGGTTCTGTGGGCAAATTTAAAGTTGAACTAAGATTCTATCT3620.11863445839437109No Hit
ATACACATCTCCGAGCCCACGAGACAGCATCTTACGGATCTCGTATGCCG3600.11797901939771711No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)