FastQCFastQC Report
Fri 10 May 2024
EGAF00003636069

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003636069
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences100
Total Bases10 kbp
Sequences flagged as poor quality0
Sequence length100
%GC45

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ACAGTAAATAGGCAGTAGCAAAAGCAGAAAGAAATGTTTTATTCTTTTTA44.0No Hit
ACGCAGAGTACATGAATTCTATAGGGATAAAAGTGTGGAAAGAAAGATAC33.0No Hit
GACAAAAGCAACAAGCTCAGGGCTGACATCAAGATACCTCCCAGAAAGAG33.0No Hit
CAGACCCACAGACCTGGGCAAGGCTGATGGAGTGGGTTGCCGACTTGGAT22.0No Hit
GTCCAAAAACTTAGCATGGAATATATGGCTCTTCAAATATTGAAGCCTTT22.0No Hit
CTGTGGCTCACGCCTGTCATCCCAGCACTTTGGGAGGCTGAAGTGAGTGG22.0No Hit
CACCTTCACCGTTCCAGTTTTTAAATCCTGAGTCAAGCCAAAAAAAAAAA22.0No Hit
GGATTTATTACATTTAAAAAATTATATTAAATTATATTACATTAAAATTT22.0No Hit
GGCCGAGCGCCTGCTCCTGTGGTGTGTGCTGGAGCACCAAAAGCCCCTCT22.0No Hit
AGTCTTTTCTGTTCAGTTTCATGGCTATGAGGTGTTGCCATCAGCCAAAT22.0No Hit
GACCATTGCTCTCATATCATGAACAGTTTGCAATGGTTTTGAATCATCAT22.0No Hit
TTGATACTCAACTCATTATTGAAAAGGCCGAACATGGAGATCAAGATTAT22.0No Hit
CTCCGGGGCAGGGCCCAGGCCAACTCCTGTAAGGAATGCAAATCCAGCAA22.0No Hit
ATCCCACAGATGGTAGCTTCGCCCCATTGGCTCCTCAGCCAAGCACATAC22.0No Hit
GGTGAATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAA22.0No Hit
AGTATAAGAGATCAGGTTCGTCCTGTAGTGTTGTGTATGGTTATCATTTG11.0No Hit
GTTAAGGCACAGGACAAAGAGAGGAAAAGGAGGATTCTTTGTTTTAAATA11.0No Hit
CTTCGAGAAGAACAGGCCCTCGGGGCTGGATAACGAGGCGATGAACTGGG11.0No Hit
GCGCCTCGTCCAGCCGCGGCGCGCGCCCAGCCCCGCTTCGCGCCACAGCC11.0No Hit
GCCTAGACCTACCATCCTCCTCAGTTCCCTCAAAGACTACTATCAGAGTC11.0No Hit
TTACACATATTATCTATCATCCTTCCAACATTTGGAATTATAAGCATTGT11.0No Hit
CCTTTTCATAACCTGATTTAGTTCATCATTTGCTGTTCTGAGCCGGAGAG11.0No Hit
GCGACACGCTTCTCGCCGGCACGCTCGAGCATGCGCAGCCTGAGATAGCG11.0No Hit
GCTTTATGAAAATTCCCAACACTGTTCAACAATACTTTGGCCACTCTACG11.0No Hit
TTTAATCACCTCCCAAAGTCCTGACCTCAAAATACCATCACATTAGGAAT11.0No Hit
GTCAGCCCTGAGCTTGTTGCTTTTGTCTTCCCTGGGGAATGTTTTCTTTG11.0No Hit
TTTAATCACCTCCCAAAGTCCTGACCTCAAAATACCATCACAGTAGGAAT11.0No Hit
CATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATAC11.0Clontech Universal Primer Mix Long (96% over 26bp)
AGAGATAGCCATGTGAAGTTCTGGCTAGGTGCTTTCACATAAATCTTTTC11.0No Hit
CTGCCCCCCACTTCCCCAACGGGGCGGCCGGGCAGAGACGCTCCTCACCT11.0No Hit
GGCCCCTGCAGCCGCCACAAACATACAAAGGGCAAAACTTGCATAGACCT11.0No Hit
ATCTTACCAGAAAAATACATATCTGCACAAACATCAATATTTAAGTGCAA11.0No Hit
CAGCTCTTCTTTGTTCATCTGGTAGAATTCAGCTGTAAGTCCATCTGGTT11.0No Hit
CATCTTGGATGACGATGTTCTTGACTCCGGGCTCATTGATGAAGGTATTC11.0No Hit
CCATTATATTCCAATCCATTCGAGTCCATTACTTTCTATTCCATTCTAGT11.0No Hit
ATATTGATGATTTGGCTGATGGCAACACCTCATAGCCATGAAACTGAACA11.0No Hit
CAAGACTAGTAGTGAACCAATAAAATCCATTAAAGCAGGAAGTAATTAAA11.0No Hit
GCCGCGGACCGCGCCGGATGCCGATGGACCTCTACCGCGACGGCGACCAC11.0No Hit
ACAATGTTGGAGGAGAGAGTAGAAGATAATGACCATGCTAAGATACCTTT11.0No Hit
GTATTTCAGATATTATTCTTAGGAAACGCAACGAATTTTAAAGAGATGTG11.0No Hit
CCTCGGCCTCCCAAAGTGCTGGGATTACAGACGTGAGCCATCGCGCCCAG11.0No Hit
CTGTCAACCCCAGCATCCTTCCCACTGCTTTCATGGGCACGGCAATGATC11.0No Hit
GACTGGACCCTGGACTACGCTGCGGGCCAGGAGATCACTGTGCCGCTGAA11.0No Hit
GATTTTTTATGTTGATTTTGTGTCCTGGAACTTTACTGAATTTTATTTAT11.0No Hit
GCGTCCCCCTTTCTCTACAGCCTTGCTGATATGTTATTTTTTTTGACTTT11.0No Hit
CCTTTTCATAACCTGATTTAGTTCAGCATGTCCACTTGTTCACCGCATTG11.0No Hit
CCATGATTCCATTCAATTCCATTCGCTGATGATTCCATCTGAATATATTC11.0No Hit
ATTCCTAACTTTGCACACATTCTCATAACCCTGAATTTCCCCCACAACAG11.0No Hit
CCTGCAGGCGATGCGCGACTTCGGCGCGCCGCAGCAGAACATCGTGTATG11.0No Hit
GACTAACAAACTAGCTACAAGATTAGAAATTAAAGTTTAGGGGCCATGCA11.0No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGTTTAAGTTTGT11.0No Hit
CATTAATCAAGAACGAAAGTCGGAGGTTCGAAGACGATCAGATACCGTCG11.0No Hit
GCGTCCCCCTTTCTCTACAGCCTTGCTTATATGTTATTTTTTTTGACTTT11.0No Hit
GATGTGAAGAGAAAAGGAAAGAGCGAAATATCAATGGTGATGATTAACTT11.0No Hit
TGGCAATCATCATCCACTGGAATCAAATGGACTCATTGAATGGAATCGAA11.0No Hit
GGCTGATGGCAACACCTCATAGCCATGAAACTGAACAGAAAAGACTGGGA11.0No Hit
GGTTAGACGTCCGGGAATTGCATCTGTTTTTAAGCCTAATGTGGGGACAG11.0No Hit
TTTCAATAATGAGTTGAGTATCAAAAAGGACGAAGCCACACATGACCACC11.0No Hit
GCATAGAGTGCACTGAGGGTGAAGCAGGTAAAGATCATTGCCGTGCCCAT11.0No Hit
ACGCAGAGTACATGAATTCTATAGGGATCAAAGTGTGGAAAGAAAGATAC11.0No Hit
GACCACCAGTCCCACATACAGGTTTGCCTGGAAAAGCCAAATGGATCCAA11.0No Hit
CCATTAGGGGGGCCACAGATGGGCCCTAAGTCAACACCGTTCTTCATGTA11.0No Hit
GCGCCTCGTCCAGCCGCGGCGCGCGCCCAGCCCCGCTTCGCGCCCCAGCC11.0No Hit
CTACAGGCACGTACCACCACACTCGGTTAATTTTTTTGTAGTTTTAGTAG11.0No Hit
ATCCAAGTAAGTCTAGTATTTCCTTGAAATTTGGAAGACAGAACAAGTTC11.0No Hit
CTTGTAAGAAGCCCCTGTCTAAACAGATGCTGCCTTCACTTTCGGACATT11.0No Hit
GGTTAGGAGTTTAGTTTTGAATATGTTGGAGGTGTTTATGAAACTTTTAA11.0No Hit
CTTAAATGTAAGACCTAAAATCATAAAAACCCCAGAAGAAAACCTCGGCA11.0No Hit
GAAGCTTGTAAGGTAGCAGCAAAATGCTGCATCTGTTAGAATCTCACAAA11.0No Hit
CATTTATTGTATTTCAAATCACTGTACATTTACTTTTGTGAAAACACTGC11.0No Hit
GGCTGGATGGTCACTTCATTTCTTCTCTTTCTTCTTATCCTTTTCATTCA11.0No Hit
CTTACTGAAGTTGCCCCTGAGATGGAAGCCCTAGAGGTGTGAAGCTGACA11.0No Hit
CCCCACGACTGGGACGAGTCCGGAGTTAAGCAGATCGGCGTAGGCAGTGA11.0No Hit
GCAATAAACATGGGGACAGATGATAAAAGAAGGGTTATGGAGAGCCAAAA11.0No Hit
TTACACATATTATCTATCATCCTTCCCTCATTTGGAATTATAAGCATTGT11.0No Hit
GGATTTGCATTCCTTACAGGAGTTGGCCTGGGCCCTGCCCTGGAGTTTTG11.0No Hit
GTACAGCATGATGAGCTGGCCAGATGACGTCCCTCCTGAAGGCTGGAACC11.0No Hit
GTGCAGTGGTTCACACCTGTAATCCCAACACTTTGGGAGACTGAGGTGGG11.0No Hit
CTCCTGTAAGGAATGCAAATCCAGCAAGAAGTCCCAGTCTTTTCTGTTCA11.0No Hit
CCATTGATTTGACTGGAACCAGCAAAAGTGCTCATGATATTGATGAATCC11.0No Hit
GGCCTATGTCCATATGGTCACTCATTTCATTCAGGCTGGCCTGCTGTCTG11.0No Hit

[OK]Adapter Content

Adapter graph