FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003636070

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003636070
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences100
Sequences flagged as poor quality0
Sequence length100
%GC47

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTCTGTCGGCCAGGCTGCCTCCTGTGTTCAAGCGATTCTCCTGCTTCAG44.0No Hit
CCCAATGGATGTTCAAAGACCCGGGGCAGTCTAGCAAGGATCAACTGTAT44.0No Hit
AGTTGGCCTGGGCCCTGCCCTGGAGTTTTGTATTGCTGTCAACCCCAGCA33.0No Hit
ATCCTGGCCTCGCTGTCCACCTTCCAGCAGATGTGGATCAGCAAGCAGGA22.0No Hit
GTGTGGCTTGCTTTTGCTATAATTTAACTTAAGACATTCCTACTGATTCA22.0No Hit
CTATCATTGTGAAGCAGAATTCACCAAGCGTTGGATTGTTCACCCACTAA22.0No Hit
AGCTGATACCATCGGTTATTTGCGTGGGTGAAGGCTAACAGTTGCTTGCC22.0No Hit
TCACTGCAGAGTGTTCTGTAGGAAAGCATCGCTCTATATGTTACTGATTC22.0No Hit
ATTTAACCCTGGAATAATAGAGGGGTGGGGAAGTCCCTGGTGAGATCTAT22.0No Hit
GTCTTTAAGTAGGGGATATAAGCTATGGAAATAACTAGAAAACAATGTCA22.0No Hit
CCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCATGAACC22.0No Hit
CTCTATAATCGCTTGCGCTCAGCGACCCAGCCCAGGAATCAAAGAGCTGG22.0No Hit
TATTTGATCGAAAGATCAACTTTGATGCGCTTTTAAAATTTTCTCATATA22.0No Hit
CTTTGTATGTTTGTGGCGGCTGCAGGGGCCTATGTCCATATGGTCACTCA22.0No Hit
AGTCATAGTTACTCCCGCCGTTTACCCGCGCTTCATTGAATTTCTTCACT22.0No Hit
CAGGTGTCCTAAGGCGAGCTCAGGGAGGACAGAAACCTCCCGTGGAGCAG22.0No Hit
GTTTCTTTACTATGCTTCTTCCCTTTAACATCTTATGCCTACTTCTGATT22.0No Hit
ATATAACCCCGTCAACGCAGCAGCACCTGAAGAAGGTCTATGCAAGTTTT11.0No Hit
AACATACACAGTCATCGCCACCCGGTTCGACAACAGAGTATTTCCGTGTA11.0No Hit
ATCTTTACCTGCTTCACCCTCAGTGCACTCTATGCCAGGCGCCGTAGCTA11.0No Hit
TCATTGCCGTGCCCATGAAAGCAGTGGGAAGGATGCTGGGGTTGACAGCA11.0No Hit
GTATAGCAAGTCCCGGATCTCATCAATGACAGTAATTGGGTCCCCGCCCA11.0No Hit
GGTCAAATTTTAACCATTAAATTGCCATTCACTTTTAGAATCTTGTATTT11.0No Hit
CCACATCCTCTCCAGCATCTGCTGTTGTCTGACTTTTTAATGATAGCCAT11.0No Hit
GGGATAGGCCGGGCCGACCACTGTCTGGTTGGCCGTGACGATTTGCTGCG11.0No Hit
GGAAAAGCCAAATGGATCCAAAGAAAACATTCCCCAGGGAAGACAAAAGC11.0No Hit
GCGATGTACTGGCCGTCCTGGTTCTTCAGCGGCACAGTGATCTCCTGGCC11.0No Hit
GTACCTGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA11.0Clontech Universal Primer Mix Long (96% over 26bp)
CTAAAACAGTGAATAACTGAAAAATAAATGAAACAAAATGAAGACATAAA11.0No Hit
GTGTGAGAGTTCTGAGCTCATTAAAGCCATGTCCCTACTGTTGCTCCTAG11.0No Hit
GACTACAGGCACCCGCCGCCATGCCCGGCTAATTTTTTGTATTTTTTAGT11.0No Hit
GTTCTTTGGAGTTATTTGCCATCAAAAATCTCTTTTTTTTTTTTTTGAGA11.0No Hit
CGCTCGGGGGTCGCGTAACTAGTTAGCATGCCAGAGTCTCGTTCGTTATC11.0No Hit
GGCCAGGCTGATCTCGAACTCCTGACCTCAGGTGATCCACCTGCCTCGAC11.0No Hit
GCAGTGGAGAGAGCCAAGATCATTTTTGCCATAGATCAAGATGTGGAGGA11.0No Hit
AATGTGTGCAAAAAGGAAATGAGGGGTGGAAGGAGAGGAAGTCTAATTGG11.0No Hit
ACATAAAGTAATATTTTATGACACTCAGTGTGACAAAAATCTAGGTAGAT11.0No Hit
CTTCAAGGAAGTCCCGAAGGACATCCTCGAGGCCGGTCGGATGGACGGTG11.0No Hit
GTAATGAAATCTAAGAAGAGATCAATGCAGTGCCAGATATAATCTTGATC11.0No Hit
ATTCGATTCCATTCAATGATGATTCTATTTGTGTCCCTTAGATGATTCCA11.0No Hit
ACAACGAACTGTTCGACGCCGAACCTCACCGGTTCCGGCCGGAGACAAGG11.0No Hit
ACCGCTGGCCGTGCCGGGGTCCACACCCATGGGGCGGCGGCGCCGCCAGA11.0No Hit
CCAAAATGAACGAAAATCTGTTCGCTTCATTCATTGCCCCCACAATCCTA11.0No Hit
GGCCTCCACCCGGGTGCCGCGTGACTACCGCGTGGCTCTGCAGCATTCAC11.0No Hit
GGAGAGGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTC11.0Clontech SMARTer II A Oligonucleotide (100% over 25bp)
GCAGTGGGAAGGATGCTGGGGTTGACAGCAATACAAAACTCCAGGGCAGG11.0No Hit
CCCCTACACATTCAAAAAACAGAGTTTTCCCGTAACCCTGTTGAGAAATG11.0No Hit
GTGCCAGATATAATCTTGATCTCCATGTTCGGCCTTTTCAATAATGAGTT11.0No Hit
AGATACCTCCCAGAAAGAGGTAGCTACGGCGCCTGGCATAGAGTGCACTG11.0No Hit
GCTCTTTATATTGTGTGTTATCTGACAAGATAGTTATTTAAGAAACATGG11.0No Hit
ACCGCTGGCCGTGCCGGGGTCCACACCAATGGGGCGGCGGCGCCGCCAGA11.0No Hit
CTGCTCCATACCTTCAACAACCTGAGTTCACAACTGCTGTTGGAGATCCT11.0No Hit
TCATTACTGTCTTCAGAAAACTCATGATGATCCTGGCCATGAATGAAAAG11.0No Hit
GTGATACCTCATATCAACATAATAAATGAAAAATGAAATATAAATATTTC11.0No Hit
CAATATGGGGAAGAGGTTGAAGCTGAAGATAAATCCAATCTGGACTCTGA11.0No Hit
GATAGCAACACCTCATAGCCATGAAACTGAACAGAAAAGACTGGGACTTC11.0No Hit
GTGCACTCTATGCCAGGCGCCGTAGCTACCTCTTTCTGGGAGGTATCTTG11.0No Hit
CTCATGAGAGGAGAGACATTGCCTATTTGCTTACTATCTCCCTATTGCCT11.0No Hit
GTCTGGGAAGTGAGGAGCGCCTCTTCCTGGCCGCCATCCCATCTAGGAAG11.0No Hit
CTTTTTGCTTGCTTCTGTTCCTGGGTGGGATCGCAGAACTGGTTGAGCTG11.0No Hit
CTTCTGACCTCACGTGCTCCGCCTGCCTTGGCCTCCCAAAGTGCTGGGAT11.0No Hit
TGGTGAAACAGAATGAATTTGGGTGCAACTGCAGCTGAAACACATTAGGG11.0No Hit
GACTACAGGCACCCGCCGCCATGCCCGGCTAATTTTGTGTATTTTTTAGT11.0No Hit
GTAATGGAATCGAATGGAAAGTAATGGAATGGAATGGAATGGAGTGTAAT11.0No Hit
GAATGGAATCGAATGGAATCATCATTGAATGGAATCGAATGGAATCATCA11.0No Hit
CTCTCCTTCATTGAACTTTCCCTCCCTCACTGATGCTGCAGCCTTTCCAG11.0No Hit
GAATTCCAATCCTAGGCATATTCCCAATGGAAAGGTGTGCATGTGATCAC11.0No Hit
GTGGGATCATATAGATATGCAAATACATATTCCTAGATATATAGCCTCTA11.0No Hit
GATTTCTAGAGGACCAAGCTACTTAGTCGAATTAAGCTACATTTTTCTGT11.0No Hit
ACTGTGTGCAAAAAGGAAATGAGGGGTGGAAGGAGAGGAAGTCTAATTGG11.0No Hit
CCCCTATACTGCATACTAGCCCAGTAATGGAAACCATGATTCACAAGAGG11.0No Hit
ACGTCGTGTGATTTAAATATTAAAACAAATGGGGCGTGAAACCGGAGTAA11.0No Hit
ATCTTACTGTTCCCAGCAACCACCAGAATGCAAATGGGTCAAGGCAGACA11.0No Hit
ATATGGAAATTATGTAATCCAACATGTACTGGAGCACGGTCGTCCTGAGG11.0No Hit
GGTTTTGAACCTGGGGCCTGAAGAAGATTTCTAAGTGTTACAGACGTGTT11.0No Hit
ACTTTGATGCGCTTTTAAAATTTTCTCATATAACCCCGTCAACGCAGCAG11.0No Hit
ATCCTAAACAGACCAATACAAGTTCTAAAATTGAATCAGTAATAAATAGT11.0No Hit
GTCCGAGGTTCAGCTGGCGCAGGAAGCTGGCCGTCTCGCGCTCGCGCGTG11.0No Hit

[OK]Adapter Content

Adapter graph