FastQCFastQC Report
Sat 23 Apr 2022
EGAF00003636077

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003636077
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences28
Sequences flagged as poor quality0
Sequence length100
%GC59

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATAGTAACGTCAGATTCCGAATCGCGAAGGGCCTTGTTATATGCCTTCGT310.714285714285714No Hit
GTTTTCGGTTTCTTCGTGCGGATACCAAGTTTCATCGTTGCTGTTGAGGA310.714285714285714No Hit
CCGTTCGGGCTTCAGGAAGACCAGCACGGCGACCGTGCGTTCTGTACTCA27.142857142857142No Hit
CCACCGGGCCGGGCAGCCCACAGCAAGTCCTCCTGACGGCCCACGGGACG27.142857142857142No Hit
GACGCAGCCCGCGACGTCCTAGGGCCGGGTTTTCCTCAGCGCCCAGGTCG27.142857142857142No Hit
GAGACACCCTTGGTAGAAAAATCAGCACAGTCCTCCCACAGTTAAGAGTT13.571428571428571No Hit
GACTAATGACTTGTCGCGGGACAGGATCTGTGCCTCGGAGTCGAGCTCGC13.571428571428571No Hit
CCGTAGAGGAAGAACAGGATGAAGATGAGGACGGTGACACCATGCTAGAC13.571428571428571No Hit
GTCTGGGAGCATGGACGCAGCGGGGGTAGCCTATCAACTTACGAGGGCAA13.571428571428571No Hit
CCGTAGAGGAAGAACAGGATGAAGATGAGGACGGTGACACCATGCTTGAC13.571428571428571No Hit
GTACTTGTTGACGCCGATGAGGGGCTGACGACCCGAGTCGATACGAGCCT13.571428571428571No Hit
GACGCGGCCCGCGACGTCCTAGGGCCGGGTTTTCCTCAGCGCCCAGGTCG13.571428571428571No Hit
CCTGACCACTGCCCTCCCATGGCTCTGCAGACCAGCGCTTTCCTGGGCTG13.571428571428571No Hit
GACCCAGGCAGCGATGGGCAGGACAGGCCTGGCATCTCCCACGCAGGCTG13.571428571428571No Hit
ATGCGAGTCATTTGCTTGGGGAATGTAAATGGTCGTGGTCCACAGGCTTG13.571428571428571No Hit
ATCGAGGAGGCTGCACGCCTGGCGATCACCGAGTTAGGCGACGCCACACC13.571428571428571No Hit
GAGCACCAGGGGCACGATGCTTCCCATACAGCTAACGAATTTCTTCTCAA13.571428571428571No Hit
GTTAGTGAGTTAGCGTTACCTGTTACCTCGTATTTATAGACTTCCCCCAA13.571428571428571No Hit
GTGTATGACGGCGCGCACCGGTTCGACACGCAGTACGTCGACGTCAGGGA13.571428571428571No Hit
GGGCAACTCCGACCGGGTCGGAACCTGTGCCAGGCTCGTTATCCCGCTCC13.571428571428571No Hit
GGCGGCCTACCTTGCCGCGCTGGACGAAAACCTGCGGCTGTGGGCTGCAC13.571428571428571No Hit

[OK]Adapter Content

Adapter graph

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)