FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003636278

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003636278
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences78
Sequences flagged as poor quality0
Sequence length100
%GC61

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGCCGAATTTCCGACGGCCTCCGGGCCGTCTTTTTATTTCTGCGCCCTG67.6923076923076925No Hit
GAACGCTGCTTTCTTGGCCACGGTGTCCACGCAACTCACATCCACTTCCG45.128205128205128No Hit
GGCTGATCCTCGCCGGGCGTGGGGCGCCGGCCTTGCCCTTCGCCACCCTG45.128205128205128No Hit
GGCCCTCCACCGCGTCGGTCAGCACGGTGGGCGTGTGCGACAGCACCGCC45.128205128205128No Hit
CCAGGTCGGCGCGTTTGCCCTCGCCAATCACCCCGCGATCCTGGAGATTA33.8461538461538463No Hit
GGCGCCATGCTTGAACGGCGCGCAAGCCGGATTCCCTTTTTTGGTGATCT33.8461538461538463No Hit
CACGTGAGCACCGCCACGGGAAAGCCGGCTGCCAAGGCGATCAGGAAAGC33.8461538461538463No Hit
TGTGAGGAAGGAAAAAAAGACAATAAAAATGTATTTGAAAAATATTTTTA22.564102564102564No Hit
GGATATCACCCTACCCGGCGGCCCATGCCGCAAGGTCGTCTATCCCGCAC22.564102564102564No Hit
ACGCGCTACACTCGGGCGGTCGTCGCATCCCGCTTACGTCATGGCCGTCG22.564102564102564No Hit
GCGCGCAGGGCGTGATCGGCCGCAACCTGATCGAGTACCTCGCCACATTG22.564102564102564No Hit
AGCTGGTACCACAGACGAGCGAGACAAAGACAAGAGGCACAACCAGCATT11.282051282051282No Hit
CCATGGGCCTAACAGATGCTTTTAACTCAGCTTTGGAAAATGGCCTCTTG11.282051282051282No Hit
TCTTTCATTTTGCGGAAAAACATCAAAGGACTTAAACGGCCAAAGACTTT11.282051282051282No Hit
CGCCTTGCTGTTTGCGGCGTTGCTGTTGGGTGGGATGTCGGCTTCGTATG11.282051282051282No Hit
GTCGGCCAGGGCGGCGCCCGGCGCGAGCGCGCAGGCCAGCGCCAGCGCGG11.282051282051282No Hit
GCTGACTGGAGGCACCGGATTGATCGGGCGGGCACTGTGCCGCCACTGGC11.282051282051282No Hit
AATTCGTCAGGGTCGGTCAACGCATGCGCAGCGGTCGCCATCACGCAATC11.282051282051282No Hit
GGCCTGCAACGCGCGCGTCGTAGGTGACGCGGCCTGCGCCGTCAAATTGG11.282051282051282No Hit
TCGTCGAAGCGGCGCGGTGGCCGCTGCTCGTCATTGAACCGGCGTGGCGG11.282051282051282No Hit
ATGTCGACCTGCGCCTCCAGCGCGTCGATGGAGTCGGGCAAGGGCAGGTG11.282051282051282No Hit
CACGCGATGCATTGATGAGAGTCGCACTGCGCTTCATCTTCGCCAGTTCT11.282051282051282No Hit
TCATTGACCCCGACACCAAAAAGGTACAAGCTGGCACCCCCGACCAGCCT11.282051282051282No Hit
GGCTCAACCAGCGTCGCTTCGGCCTGTTCGTCAACGACAAGCAGGAAGCG11.282051282051282No Hit
GGCGCAACCAGCGTCGCTTCGGCCTGTTCGTCAACGACAAGCAGGAAGCG11.282051282051282No Hit
CAAGAGGTATGACCGATACCGCCCATAGCAACCAGTTTCTCTGCTTTTTC11.282051282051282No Hit
CCCAGATGTGGAGGTCATGGAAGCTTTTTACCCCGGGCGTCGCCAGAATT11.282051282051282No Hit
CCTCAAAAGCCTGCTTGTTGGCCGGCGGACGGTGTCCAACTTTGAACAGT11.282051282051282No Hit
TCACGGAGCCGTGCTGACGGTCCAACGCTGATGCCATGCTGGCCATCACT11.282051282051282No Hit
CACCTGCAGGTTGCGCGAAATGGCTTCATCGAACGTGATGGTGGTGTAGC11.282051282051282No Hit
GTTTACACTGCCTGCCGGGTCGGACTGGGGTCCATGAGTGGCACCGAAGT11.282051282051282No Hit
TCCTAAACCTGTGAGATAACAGGTCAAATGTCCTTATGTCATTCCCATTT11.282051282051282No Hit
TACCTGGGTCTGGCGATCATGTTCGGCGTGCATGCCGTGCTGCTCACGCT11.282051282051282No Hit
GAAACGCGCTCGATGCGCAGCAAGGAAGACGCGCAGGATTACCGTTACTT11.282051282051282No Hit
TCCTAAGGGCGAGACGCCGGACCTGACGGCGCTTCAGCATCCGGAGTTCC11.282051282051282No Hit
GACCTCGATAGCACGGTCGGCCGCCCTGCCCTGCGCCACCCGCTCCGACG11.282051282051282No Hit
GCTATAGGACGCTTCTGGAGTTTGGAAGCATTAAATGAATCTTGCAGGAT11.282051282051282No Hit
AATGGGACTCACGCACCTGCCGTCAATGGCGCGCTATCCCGCACTTACGC11.282051282051282No Hit
GCACCGAACTGGATGCCAAGGGCGTCGCGGCGATGATCCCGCAGTTGGAC11.282051282051282No Hit
TCCTGGTCGCGCCCAGTACCGACCCCGCGTGGACGCCGCTCTTCTTGAAG11.282051282051282No Hit
GCCCAGGGCGAAGGAGGCCTCACGCAAAGAGTCTGGCACGAGCTTGAGCA11.282051282051282No Hit
GGTCCTGATGATGCTGATGTGCTGGGCAGGCCTGATCGGCTGCCTGTACG11.282051282051282No Hit
GTTAACGAACAGCTCTGGGTGGAACGCCTGCTCCAGCCGCTTCAGCAGAC11.282051282051282No Hit
GTACCGGGAGAACGGCCACGCCATCGGCCGCCTGGCGAACCTGTGATCAA11.282051282051282No Hit
TAATCTTCCTGAACGAGCGATTTCCCACAAGCATTCGTGCCTCTGGAACA11.282051282051282No Hit
ATTCAATGTAGACGGGCCCGTGGAGCGCTGGCGAGCCGTGCGCGACCGCA11.282051282051282No Hit
ATCGAAGCAAAGAAGGTGATGGATGCCGGCGGCCTGGTATCGGATGACAT11.282051282051282No Hit
TGTTGCAGGAGGGCGCGCTGGAGCGGCTGGGCTCGAATGCTTCGGTGCGC11.282051282051282No Hit
GTCTTCCTCCATAGGGATATGGCCGAGCGCCGGATACATGCGCAGCGTGG11.282051282051282No Hit
CAATACGTGGGCGTCTGGCATTCTCTTCCGGCCGCTCGATGCGGGGGCGG11.282051282051282No Hit
TGCTGCACCGGGAGGCCAATCCCGGCAACGCGCGCCCGCTCGTCCAGCGC11.282051282051282No Hit
GTGCCAAAGGTGGGCGAGTCGGGAAACCTTGATCCTTCGGCCCCGCCCCC11.282051282051282No Hit
CGGCAATGTCCCCCAGACGCGTGGCGATGGTGTCGATGGCCTCGCCCCAC11.282051282051282No Hit
GAACAAACTAATGCACTTCGCTGAGTCGCAAAAGAATATCGACTGGGTTG11.282051282051282No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)