FastQCFastQC Report
Sat 23 Apr 2022
EGAF00003636324

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003636324
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences46
Sequences flagged as poor quality0
Sequence length100
%GC60

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCATAACGTATGGCATGTGGCGAGTTCTCCCTGATTGCCCGTTATTTTG36.521739130434782No Hit
TCCGTCTCTTCTGCTTCGCCAGGGTTTTCAACCGGGGTTTCGGTTGAGTC24.3478260869565215No Hit
CGGCATATGTGAGCGTCGACGCGGTTCTCGCGCTGGTGGGGATGCGCGAG24.3478260869565215No Hit
CGCCGGAGCGGCTCCAGGGTATCCAGGCGCGGCATCGGCGTTTGTTCCCG24.3478260869565215No Hit
GTGCCGGTGGTCGATCCCAAGCTGTACTCGCTGATGCTGAAGTACGAGAT24.3478260869565215No Hit
ATGCCGTGTCCTGCGGGGAGACGTGTGCTGTCACATCGCGTTCCGGCTGG24.3478260869565215No Hit
GACCTCGTCGACACCTGGCAGCAGAAGAGCCTGGGCGGCTGCCGCTACTT24.3478260869565215No Hit
TGCTGCCACTTATTCCGCACGCGCAGGACATCGGTCTGCAAATCGTCGCT24.3478260869565215No Hit
GTCCCCGACCAAGGCACAGCTGATCCCGTGGGCCGTCCGCACCGTGCTCA12.1739130434782608No Hit
ATGCGGAAGTGGTCACTAGGTGAGCAAGCACTAGAAGAGTTCTTAGTGGG12.1739130434782608No Hit
GGATATTTGGAACTCCCTGAGGATTTCGTTGGAAACGGGATAACGTCACC12.1739130434782608No Hit
ATTATATATTGTTTCGCTTTGAGTGCAATCTCTCACGAAAAGAAAATTGC12.1739130434782608No Hit
CCTATAGCAGAATACTTGAAACGGCAATTTATAAAGAATAAAGATTTATT12.1739130434782608No Hit
GCGACTCGCCGGACGAGCCCATCATCTTCGACACCTCGCACCAGTCCTAT12.1739130434782608No Hit
TGTTGAAGGTGAACAATGCATCGAGCACCGGCGCCGCCAGCGGCACCACC12.1739130434782608No Hit
CCTGGCGATGGCCGTTGCGCCTGATGCCATGCCGCTGGTGACTGCCGCGA12.1739130434782608No Hit
GCGCACCACAGCATTTAAAAAATCGGGAAAAACTTTGGAACGAAGTCGAA12.1739130434782608No Hit
CCTCTATAATGATCACGGGGGGCGCGTGCCCGCGTCTTGATCACGGGGTC12.1739130434782608No Hit
GGCTCACACCTGTAATCCCAGCACTTTGGGAAGCCGAGGCGGGTGGATCA12.1739130434782608No Hit
GTGCTCCGCGATCTCCTTCGCATCCGTGCGCAACTCAAGCTCCATGCGGG12.1739130434782608No Hit
CCTGGTCTACTTCCGGTTCCTGGCCGGGTCGGGCTGGGGCCAGGTGGCGA12.1739130434782608No Hit
GTTAGACCTCTCCACGCTGGCCCCCGCGCCGGAGGTCCCTGACTTTAGCT12.1739130434782608No Hit
CGTCCAGAGCTTCATCGCTTGTCTTGGCGGAGTAGATCGGATGCTCGTTT12.1739130434782608No Hit
GTGTCAGTGGTGGCGCATTATAGGGAGTTATTCCGGTCTGACAAGAGGAA12.1739130434782608No Hit
CGTGCCGGTGTTCATCGACGAGTCCATGGTCGGCCACAAGCTCGGTGAGT12.1739130434782608No Hit
GGCCGGAGGACAGCACACGGGCAACGGGCTGGTCAGGGCCGGCCATGACG12.1739130434782608No Hit
GGCGCCATCTCTGCTCACTGCAAACTCCGCCTCCTGGGTTCACGCCATTC12.1739130434782608No Hit
GAGTAGGGATGTCAGGCGGAGAAGGGGAGGCGGCGCAACAGGCGGAACGG12.1739130434782608No Hit
CGCGGGAGGTGGGGGGGCCCCCCCGCGCCCCCCCCCCCCCCCGCGCGCCC12.1739130434782608No Hit
GGTGTTGGCCTCCACGCGCGGACTGTCGATCGAACTCCGCCGGTTCGTCG12.1739130434782608No Hit
TAATTAGGCTGCTGAACTAATGTAATGGCTCCTAAGGAAGTTAAGCTTCC12.1739130434782608No Hit
GGTTGGTTGTGGGAGAAGCTAATTTGCCAAACACTGTGGTCGCACGGTCT12.1739130434782608No Hit
ACATCGAGAGGGCGCGACGGCAGGAAACGCGCGCGCGACGCACCGTGGCC12.1739130434782608No Hit
GTGCCTAATAGAATTTCTGCTTCGATTTTTTGAAGCAGTTTTTCCAGAGT12.1739130434782608No Hit
GCTCCATGATGCTCGTCTTCGCCGGTTCCCACATCAACCCGGCTCAGACC12.1739130434782608No Hit
CGAGCACGGATGAGACGTCGGACTCGCTCATGCCGTAGAGCCGCTCCGCC12.1739130434782608No Hit
ACCTGGCGCTCCGCGTCCTTGAGCTTCTGAATGATGACCTGGCGCGCCGT12.1739130434782608No Hit

[FAIL]Adapter Content

Adapter graph

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)