FastQCFastQC Report
Tue 10 May 2022
EGAF00003636482

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003636482
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2385946
Sequences flagged as poor quality0
Sequence length100
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCTTAGGGGTTTTGTTTTTCTCTTTTGAGAGAGGCCATCATTATCATTG37530.15729609974408473No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG36440.15272768117970817No Hit
CCGTAGAACTGATGCTTGCAGAACGCAGTCTCTTAGGGGTTTTGTTTTTC27480.11517444233859443No Hit
ATACAGAATAGTCAAATATTTTGCACAAGGAAATCTTGTTGATGATCCGT27010.11320457378331278No Hit
CTCCAAGGGCTTCCCGTCGGGACCATGCGCGGCAGTGAGCTCCCGCTGGT26820.11240824394181594No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT25570.10716923182670522No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)