FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003636519

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003636519
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences65
Sequences flagged as poor quality0
Sequence length100
%GC54

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAACTCGCCCCTGACCGAGCGGCTCATCCGCAAGGCAGCTACCGTCCACC23.076923076923077No Hit
AGCAGTGTCACTGCGTGGGTTGGTTTGTGTAGAGAGGCGTGAGCGAGCCC23.076923076923077No Hit
CTCCACGCACAGGCCCTCCAGGTAGGCTCTCAGCTGCTCCGCCACACGGG23.076923076923077No Hit
GTGCAGAGTAATGCCATCACTGGGCACTGCGAATGCCATGACTGAAGAAT23.076923076923077No Hit
GTACATGGGCTCTCCGCCAGACCGCCGCCGCGCCGCCATCATGGACACCA23.076923076923077No Hit
GGATTTGACCGAGTCTTTATCGTGGCTTCCGTTACATCTTATTCTAACTC23.076923076923077No Hit
CCCTTTCTTCTACCGACGGCACATCACCCTGCGCCTGGGCGCACTGGTGG23.076923076923077No Hit
CTCCAGGTTACAGCTGGAGAAGAGGGGAAAGGTGTTTGGTTGTACAAGCA23.076923076923077No Hit
GTGCAAGACGTCTTGTGATGTAATTATTATACGAATGGGGGCTTCAATCG23.076923076923077No Hit
TCCTTATCTTGGATCTTTGCCTTGACATTCTCGATGGTGTCACTGGGCTC11.5384615384615385No Hit
CTAGAAGTCGACGAACAACGAAGAGCGACGATGCCCGTTTCAGGTGGTCC11.5384615384615385No Hit
GGAATAATGGAATAGGACCGCGGTTCTATTTTGTTGGTTTTCGGAACTGA11.5384615384615385No Hit
GAAATGTTCGGTGATCCGGGACTCACTGCTGCAGGATGGGGAATTTAGCA11.5384615384615385No Hit
GCTTAACGAAACACTATCAGCTTGTTTTAAATGGATCTTTTAAATATCAA11.5384615384615385No Hit
AGGTTGAAGTGAGAGGTATGGTTTTGAGTAGTCCTCCTATTTTTCGAATA11.5384615384615385No Hit
GCCTTTGGGACCGCTTCTCGTCGTCGTCCACCTCCTCTTCGCCCTCGTCC11.5384615384615385No Hit
GTGGAGCGATTTGTCTGGTTAATTCCGATAACGAACGAGACTCTGGCATG11.5384615384615385No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT11.5384615384615385No Hit
CTCTAGGTACCTCGCAGAAGCGAAATCATGAAGTATTTGTCCTTTTGTGA11.5384615384615385No Hit
GGGCATCACAGACCTGTTATTGCTCAATCTCGGGTGGCTGAACGCCACTT11.5384615384615385No Hit
GATTGGATACGCATCAGACAGATGGAAAAGGGAGATTCAGACTGTTTTTC11.5384615384615385No Hit
CCCCGTGGCGGCGACGACCCATTCGAACGTCTGCCCTATCAACTTTCGAT11.5384615384615385No Hit
CCCGTTCACCATCACCTTGAAATCTGAGCTCTGCACCAGGAAGCAGAGGT11.5384615384615385No Hit
GTGGTGTGTCATCTGCCACTCAGGCTGGTGCGGCGGCAGCCACCACTGCA11.5384615384615385No Hit
GGAGACCCCCGTTCCTGCATGCGCTGTCGCCCCGCCACGGTGCTCTCCGC11.5384615384615385No Hit
CTTCACTGATTCCCACGTGAGAAGGCAGGAGCCATCTTCAAATCCACAGA11.5384615384615385No Hit
CATTAAAGCAGCCGGTGTAAATGTTGAGCCTTTTTGGCCTGGCTTGTTTG11.5384615384615385No Hit
GAGAAAAGAGAGACAAGCCAAGTAGTACAAAATGTCAAAAATTAGAAGGA11.5384615384615385No Hit
CAAAAAGGTACTGAAGATTTACCCCCCAAAAAAAATTGTCAATGAGAAAT11.5384615384615385No Hit
CGTATGCAGACGCCAGCTCCAGTCTCAAGGAGGGTGGGGCTTGCAGTCAG11.5384615384615385No Hit
ACCAAAGTCTTTGGGTTCCGGGGGGAGTATGGTTGCAAAGCTGAAACTTA11.5384615384615385No Hit
GGCTAGAGTGCAGTGGTGCGACCTCAGCTCACTGCAATCTCTGCCTCCTG11.5384615384615385No Hit
CCTCGGACTCCTGCCTCACTCATTTACACCAACCACCCAACTATCTATAA11.5384615384615385No Hit
CCAATGGATCTTGACTCTTTATTCAATTTGCCAGTCTGTGTCTTTTAACG11.5384615384615385No Hit
GTACATGGGCTACCAGGTGTCTTGCGCCCATGATGTCTGAAGTCATCCGA11.5384615384615385No Hit
ATCCAAGCGTCTTATGGACACAGACTAGAAACTTCCCATGCAACTGGGAT11.5384615384615385No Hit
GTCATAGGCAGACCCAGAAAAGGCACCACAAGTTCCTACTGTGGTCTGCA11.5384615384615385No Hit
GATAAATGCACGCATCCCCCCCGCGAAGGGGGTCAGCGCCCGTCGGCATG11.5384615384615385No Hit
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT11.5384615384615385No Hit
CACACACACACACACACACACACACACACACACACAAACAAACACACACA11.5384615384615385No Hit
AATGAGAGGAGTGGAAGCTGCATTACAAGAAATTCACTGGGGCTGCACTT11.5384615384615385No Hit
CTCTAGGTACCTCGCAGAAGCGAAATAATGAAGTATTTGTCCTTTTGTGA11.5384615384615385No Hit
GCACAGAAGAGTGCAAATGAGGGGGGTGTAGCCAGCAGCAGTAAGACCCA11.5384615384615385No Hit
GTCTTCAAACCGCACCCCAAGCTCAGGCAGGATGTTGTCCCGCAGGGCAT11.5384615384615385No Hit
GCAAAGGGGAATGTTTGCCTGAAGTGTACAGGAGCGATTAGCTCAAGGAA11.5384615384615385No Hit
TGGAAGGGGTAATCCTTGTGGGAGGTACAGCTCAACAAGGCACAGACCCT11.5384615384615385No Hit
CACACACACACACACACACACACACACACACACACACACACACACACACA11.5384615384615385No Hit
GCCCTGGGCTTCTACCCTGCGGAGATCACACTGACCTGGCAGCGGGATGG11.5384615384615385No Hit
CCATGGAGATGGCTGCAGCAAAGGCTGCGGTGGTTGAGACAAGCGGGCCG11.5384615384615385No Hit
TTGCCACCCTTTACATGCTGTGTCATTTGGGTTAAGACATTTGACAACTT11.5384615384615385No Hit
CACACACACACACACACACACACACACACACACACACACACAAACACACA11.5384615384615385No Hit
GGACAAGGCCTCTCTGCCTGCTTGTCCCTGAACATAAACATCTTGCTCAT11.5384615384615385No Hit
CGAGGAAAGGTGTGCTGTGCCTGAGGCCAGCGTGCCTGCCAGTGTAGAGC11.5384615384615385No Hit
GAGTGGGCGCTGCGCACAGGCGTGGCTGTACACGTGCTCTCAGCTCATCA11.5384615384615385No Hit
GCTTAATGTTCGAACTGCATCTGTTCCCTGTTTCTTTTTCAGGAGAGATA11.5384615384615385No Hit
CCCCAATGTCCAGGACACCTCCGGTACCAGTCCAGTCCATGACGCAGCCC11.5384615384615385No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)