FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003636560

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003636560
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences81
Sequences flagged as poor quality0
Sequence length100
%GC53

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCTATTAGTGGGTGAACAATCCAACGCTTGGTGAATTCTGCTTCACAAT33.7037037037037033No Hit
GTCTAGAAGGCCTTCCCAGTAACGTCGGGAATTGCCGAGGAGTAACCACA22.4691358024691357No Hit
CATGTACTCTGCGTTGATACCACTGCTTCCCATGTACCTGTCTCTTATAC22.4691358024691357Clontech Universal Primer Mix Long (96% over 26bp)
TCACTGGATGGATGCGTGCTGGGGTTACCATCATTGATCCCACTTCGACA22.4691358024691357No Hit
TTTATACTCGTTTTGTATGGACCGGCCGTATCGGTACTAGAAATGAGGTA22.4691358024691357No Hit
GTGCGATCCTGACGACCTTGAGAACACCAACCGTCTCCTACCCAGCCGAC22.4691358024691357No Hit
TCATCGGACAATTGGGATGGGCGGCGGTCGGAGCTGCCTGCGGCACGCTG22.4691358024691357No Hit
TTCTGATCCCACGATAATGCCCCCGCGCCACTCGCAGCATCCCCGGCCCT22.4691358024691357No Hit
CTCTCGTACTGAGCAGGATTACCATGGCAACAACACATCATCAGTAGGGT22.4691358024691357No Hit
GCTTCGCACCGGCAGGTAGTGCGCGCCGAGTGGGCAGGCGATGCCGTTGA22.4691358024691357No Hit
GTTCTTCGCAACGGCGTAGGTGGCGTCACTCCCCAGTGAACGGCGCAGAT22.4691358024691357No Hit
CTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGC22.4691358024691357Clontech Universal Primer Mix Long (96% over 26bp)
TGCCAGAGTCTCGTTCGTTATCGGAATTAACCAGACAAATCGCTCCACCA22.4691358024691357No Hit
CTGCACCACCAGCGCGTCAAACCAGCCACAGCGACGCGGACGCTTAGTCG22.4691358024691357No Hit
GAGTGGAACATTCCTCTTGATAGAGCAGTTTGGAAACACTCTTTCTGTAG11.2345679012345678No Hit
GTGTCCCGCGGGGCCCGAAGCGTTTACTTTGAAAAAATTAGAGTGTTCAA11.2345679012345678No Hit
CAATCCTGCCGATACCGTCATCATGAGTTCGGACATGGTGAGCCCAGACA11.2345679012345678No Hit
GAATGAGTTGAAGCGGTTGTTGCCTAGCTCGCGGCCGTGGAAGCAGCATC11.2345679012345678No Hit
GCCTAGTGGGCCACTTTTGGTAAGCAGAACTGGCGCTGCGGGATGAACCG11.2345679012345678No Hit
CAGTGGTATCAACGCAGATACATGGGAAGCAGTGGTATCAACGCAGATAC11.2345679012345678Clontech Universal Primer Mix Long (95% over 24bp)
TATTTCACTCTTCGTAAAGAAGTTTGTGAGGAAATACAACTCTGCGATCG11.2345679012345678No Hit
GCCCCTGATCGACGAAGCTGCCCGCTTCGTTCGCCCTGCGGTGTGGACCA11.2345679012345678No Hit
CTTGAATACGATGACCTTGCGGCCAGTTGGAGTGCGGTTCCACAGCCACT11.2345679012345678No Hit
GCTGTATGACGCCTGCTGCCGCGAGTGGGGAACGCCGTGCAATGCGCAGG11.2345679012345678No Hit
GGGGCGGCTCGGGAGTCCTGGTGGAGACCGCCGGGTCGCTGGCAGCCATG11.2345679012345678No Hit
GGTTTGTGTAGGATAGGTGGGAGACGTTGATGCGGCCACGCTAGTGGTGG11.2345679012345678No Hit
CATAAGGAAAGGTTAAAAAAAGTAAAAGGAACTCGGCAAATCTTACCCCG11.2345679012345678No Hit
CATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCA11.2345679012345678Clontech Universal Primer Mix Long (96% over 26bp)
GTTGCGGATCGGGAGTCCTGGTGGAGACCGCCGGGACGCTGGCAGCCATG11.2345679012345678No Hit
GGAGCGTGGAGTAGATTTCAGGTGCGTTCTGGCCCTGGTGCGGGGCTGGA11.2345679012345678No Hit
GTATGAAGGTTCCTCAAAAAATTAAAAATAGAGCCACCATATGATCCAGC11.2345679012345678No Hit
NCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT11.2345679012345678Clontech Universal Primer Mix Long (96% over 26bp)
GCAGGTGGCCTGAGACAGTGGGAGGCGGGGTCTCGATGGCAAACACCTGC11.2345679012345678No Hit
GAATAGAAACAGGAGGTATCCCCATCTATATCGAAAAAGCGAAGGAAGTC11.2345679012345678No Hit
TTTTTATAGCCATGGAAAGACACCTCATAGTCACATAATCTTAAGCGTGT11.2345679012345678No Hit
ACGCACACACTCCGCGCGGGATCCTCAGTCAGCTTAGCGATCTGGGTGTC11.2345679012345678No Hit
TCACGATGCTGCCCCTTGCTTGGCTACTCGCTATTATTATTCCTTGCCTC11.2345679012345678No Hit
GCTATGCTCTCCTCTCCTCCCATGTACTCTGCGTATCAACGCAGAGTACA11.2345679012345678No Hit
GCCACATACGTCCCCAAGAAGACGTCACCGAGGATCCAGAAGGGCCCTGC11.2345679012345678No Hit
CCAGACTTCAAGAATTTAGGGCCATCTTCCAGCTTTTTACCAGAACGGCG11.2345679012345678No Hit
CCCGTGCGAGCTACCTCGGCAACGAGGTCGTAAGGAGCCTGCAGCTCTTT11.2345679012345678No Hit
CCACTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTC11.2345679012345678Clontech Universal Primer Mix Long (96% over 26bp)
NTCTAGAAGGCCTTCCCAGTAACGTCGGGAATTGCCGAGGAGTAACCACA11.2345679012345678No Hit
GCCCACGGCACGGGGGACATCGACCAACTGGTCGGCCATTCCCACCCGAA11.2345679012345678No Hit
AACCTGTCTCACGACGGTCTAACCCAGCTCACGTTCCCTATTAGTGGGTG11.2345679012345678No Hit
GTTTGCACACACAATAAAAAACCCTTCTGCCTCAGCAAAAGGGTTCTCAA11.2345679012345678No Hit
GCATGGTGTTTCGCAAGGTTCTGCTACAGTTGTGCCGCCGACGTTGGCAC11.2345679012345678No Hit
AACCGAGACAACGCCATTGAGAAGCCGCGCTCGTCGCCGTTTTGACGCCA11.2345679012345678No Hit
GCCTGGGACAGCGCGACCCAGTGGGTGGCCTGCCCCTGGAAGGCGACGAA11.2345679012345678No Hit
CAATACTAGAAATTACCCAATCTGAATAAGAGAAAAAAAAGACTGAAAAA11.2345679012345678No Hit
GTATCTGATCGTCTTCGAACCTCCGACTTTCGTTCTTGATTAATGAAAAC11.2345679012345678No Hit
CTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTAAGGTTC11.2345679012345678Clontech Universal Primer Mix Long (96% over 26bp)
CTTTATGTACGTGCTAATTATGAAAATCACAGGCATTGACAGGTACGGTA11.2345679012345678No Hit
GTCCTGGGCCAGGGCGGCCATCGAGCTGCTTGCCAGGGCGACCGTCAGAA11.2345679012345678No Hit
CTCACGGAAAAGAGCATGATAGCGGAATTGGTTCTCGCCAACTTGATGAA11.2345679012345678No Hit
CATTGTGGGACAGCGGGAGGGCTGATTCGACCTTCTCGGCTGGCACCTCT11.2345679012345678No Hit
GGCAGCGGCGATGCCGTCGAAGCGGCGCGGCATCCTGATCAGATCCTCGT11.2345679012345678No Hit
TTCGTACTGAAAATCAAGATCAAGCGAGCTTTTGCCCTTCTGCTCCACGG11.2345679012345678No Hit
GCGCGCCATGGGCGCCCGCCAGCGCCACGGCCTCCAGGCCCTGGGCGGAC11.2345679012345678No Hit
GATAGAGATTAATACAACTACTTAAAAAATATAGTCAATAGGTTACTAAG11.2345679012345678No Hit
GTACATGGGAAAGCCAATCTACACTTCTACACGACGCTCTTCCGATCTCA11.2345679012345678Illumina Single End PCR Primer 1 (95% over 23bp)
AACAAGAGCTATTTATGACAAACCCACAGCCAATATCATACTGAATGGAC11.2345679012345678No Hit
CCCCGCAGATGCATGATCGGCTAAGGATGGCCGGAAGTCGTAAGCCGGAT11.2345679012345678No Hit
CATCCTACCACTCCCAATTAATCTTTCCATTTTCGTCTGCGTTTAGTAAA11.2345679012345678No Hit
GTGGGTGTTGAGCTTGAACGCTTTCTTAATTGGTGGCTGCTTTTAGGCCT11.2345679012345678No Hit
ACATTGCCGAGAAGCTAGCCCCGGCCTACCGCACCATGCTCGACGCGATC11.2345679012345678No Hit

[OK]Adapter Content

Adapter graph