FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003636563

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003636563
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences128
Sequences flagged as poor quality0
Sequence length100
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCAAGGAAGTCAGCAGGCGCGCAAATTACCCACTCCCGACCCGGGGAGGT43.125No Hit
CGCATCGACATCCTGCTCACGCTGTGGCCCGACGAGGCGAAGCCGCTGCG43.125No Hit
CTATAATTCTCGTTGAAAATAATAAACTCCCTAGTATTAACTGCTGTACT32.34375No Hit
TTATAGAACAGTTTGGAGGCTCCTCAAAAAAACTAAAATTAGAGCTACCA32.34375No Hit
GCGACTACCATCGAAAGTTGATAGGGCAGACGTTCGAATGGGTCGTCGCC32.34375No Hit
CCTTCAGCCGCATCAGCTTCGGCAGCTTCAGGTCGGGCGTGAGCACCCAG32.34375No Hit
TACCACTGCTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTGCCCAT21.5625Clontech Universal Primer Mix Long (96% over 27bp)
GCGGGGCTCAGCTTCAACCCCCTGTCCTGTAAAGCAGTGGCTGGTTTTCC21.5625No Hit
GTCCTATTCCATTATTCCTAGCTGCGGTATCCAGGCGGCTCGGGATAATG21.5625No Hit
GTATGGTTTTGAGTAGTCCTCCTATTTTTCGAATATCTTGTTCATTGTTA21.5625No Hit
ACATCGAAGGATCAAAAAGCGACGTCGCTATGAACGCTTGGCCGCCACAA21.5625No Hit
TCAATAGATGGAGACATACAGAAATAGTCAAACCACATCTACAAAATGCC21.5625No Hit
CTCGCCAGCTGAAGCAGAGAAGAAGGAGGACAACAGGTATTCCGATTTGA21.5625No Hit
TATTCCTGGAGCCCAGGTGCTCAGTCCTTATCATCTCTGAGATTACTCAG21.5625No Hit
TCTATTTTGTTGGTTTTCGGAACTGAGGCCATGATTAAGAGGGACGGCCG21.5625No Hit
CTGTACCCCATATTCCCTGTCTGCCCCAAATCCTCTGGGTCAGCGGGAAT21.5625No Hit
GCCTGCTGCGCTTGCGCTTGCGCAGCAACCTGGCGCGCGGATCACGCCAC21.5625No Hit
ATCCGGACGACACCCTGCCTGCTCAGGCGGCAGTGGGCACCCGTATGGAG21.5625No Hit
ACAGATGGTAGCTTCGCCCCATTGGCTCCTCAGCCAAGCACATACACCAA10.78125No Hit
TNTTAAAACATACTATTTCTTTGCTGTCATTTATTAATGGATCAACCTTA10.78125No Hit
TCCTAAGACCTGGCACATGTTAATTTTAATGATTATCTGGGTGAATGTAT10.78125No Hit
CTACGACGGTATCTGATCGTCTTGGGACCCCCCCCGTTAGGTGGTTTTTT10.78125No Hit
GTCAAACTCCCCACCTGGCACTGTCCCCGGTGAGGAGCCCCGAGGGGCTC10.78125No Hit
TTGTAGGGCTTTGTGATTTTATCTATATCCTTAATTGAAGCCTTGGGTAA10.78125No Hit
CTGCTGTATATCTGTGTTTTGTCCCACACCGACCGACTGGCAGAGAGAGA10.78125No Hit
ACTCTGGCTTTTTTTTTTTGAGTTTTGTTTTTGGAACAGACAGGATAATA10.78125No Hit
CCCTACTGATGATGTGTTGTTGCCATGGTAATCCTGCTCAGTACGAGAGG10.78125No Hit
GTTATTGCTCAATCTCGGGTGGCTGAACGCCACTTGTCCCTCTAAGAAGT10.78125No Hit
GATCGATGCGCTGGAGATGTCATGGATCCTCGAAACTAATACAGGCATGA10.78125No Hit
GCAGCATCCGCCTCCTGGGTTCAAGTGATTCTCCTGCCTCAACCTCCCAA10.78125No Hit
GCTCCCCGGGGCCGATTTGGCATTCCCTGCTGCCCAGTGCACCTGAAACG10.78125No Hit
ATATAAACTGGAGGGTGGGGAACTTTAGGTAAGATTTCAGATTGAAAACA10.78125No Hit
CACCCTGTCTGACTACAACATCCAGAAAGAGTCCACCCTGCACCTGGTGC10.78125No Hit
GCGTAGGGGCACACCGTCAGGGCCCACCAGGAACTTCTCAAAGTTCCAGG10.78125No Hit
CGTGACAACAACGCCGTTCGCGTAACCGAATCCGAGATTGCGGCTCTCGA10.78125No Hit
ATCATATCTTCCTCAAGGCAATGTTTCTTTGGCCCAATTCTGTCTCTTAT10.78125No Hit
CAGGAGGACAAAGTCTTCATTGCGACGAGGAGCGGAAAGCTCAGAAAAGA10.78125No Hit
AATACAGACCGTGAAAGCGGGGCCTCACGATCCTTCTGACCTTTTGGGTT10.78125No Hit
GGGTTCTGCCAGGAGAAGGCCAGCAGCACCCGGCGGAGCTTGTCGGGGAA10.78125No Hit
GTCCTAAGGCGAGCTCAGGGAGGACAGAAACCTCCCGTGGAGCAGAAGGG10.78125No Hit
CACCCACATCGTGCGAAATTCTTCCTTGTCGGGATTTTCTTTGGGTGCTG10.78125No Hit
GTGGTGGACTTGCCCGAATCTACGTGTCCAATGACGACAATGTTGATATC10.78125No Hit
GTCCTGTATTGTTATTTTTCGTCACTACCTCCCCGGGTCGGGAGTGGGTA10.78125No Hit
AGTCAGTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACC10.78125No Hit
GGATGGGGTAGAAAAGGCATCCTGAGAGAGTTCTAGACCGACCCAGGTCC10.78125No Hit
GCTACTTCCAGGGTAGTCAGGGCCTCCACCCCGCACTGGCCCAGAGTGGC10.78125No Hit
CTCCGGGCGATGGACTTCGCCACCCTGGTTCTGCCGGTGCTCCGGGAGCT10.78125No Hit
GTTCCATCACTTCCAAGTAGTACTGGTTGAGACCAGGGAAACAAAACTGA10.78125No Hit
CTCACCGGAGGCGTCCTAGATGTAGTAGAGCGGCACCTCGCCGCACAGGG10.78125No Hit
TGAGTGTCCCGCGGGGCCCGAAGCGCTGTCTCTTATACACATCTCCGAGC10.78125No Hit
ATCCAGGCGGCTCGGGCCTGCTTTGAACACTCTAATTTTTTCAAAGTAAA10.78125No Hit
GGCTGAACGCCACTTGTCCCTCTAAGAAGTTGGGGGACGCCGACCGCTCG10.78125No Hit
GCTTTGGTGACTCTAGATAACCTCGGGCCGATCGCACGCCCCCCGTGGCG10.78125No Hit
ACAAAAACTAGCCCCCATCTCAATCATATACCAAATCTCTCCCTCACTAA10.78125No Hit
GGTGAATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAA10.78125No Hit
GTTTTCTAATTATTTGCTTCTTTCTCCTCAAAACACAGAACATTCATAAG10.78125No Hit
CTGGAAGCAGGTAGAAGCAGGTTCGACTCTAGGCTTTACCTTTTTGACTT10.78125No Hit
ATCCAGTGGCTGGATCAGTAGCTGATACTTTCAGAAGTGGGGCTGGAGCA10.78125No Hit
AGTTACCACAGGGATAACTGGCTTGTGGCGGCCAAGCGTTCATAGCGACG10.78125No Hit
AGTTAGGGTTGTACGGTAGAATTGCTATTATTCATCCCTGTCTCTTATAC10.78125No Hit
AGTCACTACATGGCACATAACCAAGTCATCATTAAGTCATTTTTGAGTGA10.78125No Hit
TGGTATAGAAAGCTAGGAACATGGAGTTAGTATTCTCTGTAGTGACATTA10.78125No Hit
TCCCTGGCATCTGTAGAGTGCCCGACATCCTCAAAGTTCTCAGTAGCGTC10.78125No Hit
GGGGATGCGTGCATTTATCAGATCAAAACCAACCCGGTCAGCCCCTCTCC10.78125No Hit
GTCTTTGGGTTCCGGGGGGAGTATGGTTGCAAAGCTGAAACTTAAAGGAA10.78125No Hit
TGGGAAGCAGTGGTATCAACGCAAGTACATGGGAAGCAGTGGTATCAACG10.78125No Hit
GTTTAATCTGGTGCTTGTTGGCTTTAACATCCACAATGAACACAAGTGTG10.78125No Hit
GAGCAGAAGGGCAAAAGCTCGCTTGATCTTGATTTTCAGTACGAATACAG10.78125No Hit
GTATCGTTCCGCCTGGGCGGGATTCTGACTTAGAGGCGTTCAGTCATAAT10.78125No Hit
CTTTGATGACTGTATCCTTTGCTGTGCAGACTCTTTTTAATTTGATGTGA10.78125No Hit
CGGCACTGGCGACGGCCCGCTTCCTGGCCGACCAGCGCCCGCGCGGCAGC10.78125No Hit
GGGTTCAACGCAGAGTACATGGGGATGGCGATTACATGTCTGAGCCTGAG10.78125No Hit
CCTCAGCAGACTGTGTGGTGACCACTGTGGTGCTCTCCTCAATCTGCTGA10.78125No Hit
GTATTGCGCCGCTAGAGGTGAAATTCTTGGACCGGCGCAAGACGGACCAG10.78125No Hit
CAGACAACATGATTGAATATTTGGTAAACCCCATCATCTCAGCCCAAAAT10.78125No Hit
CTGTGGGGACAACGGTACCTTGCTTGAAAGCCACAGGTTTCAAACACTTT10.78125No Hit
GGGTCAATACTCTTCGATATCGGTGCGCTGCGGCTTGGCCAGCGGCCCCA10.78125No Hit
CATTGATGATGTCTCATTAATTATGAGATTTCCCACTCTGATGGGAACAG10.78125No Hit
GTTTTAGCTATTCTGGGTCCCTTGAATTTCCATATGAATTTTAGGATTGA10.78125No Hit
TCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGTTTT10.78125No Hit
CCGAGGCTCCGCGGCGCTGCCGTATCGTTCCGCCTGGGCGGGATTCTGAC10.78125No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTCCTTCCCTGCAATATTTATTAAGG10.78125No Hit
CCGTGGGTGGTGGTGCATGGCCGTTCTTAGTTGGTGGAGCGATTTGTCTG10.78125No Hit
ATGCATAAAAGCATTCAATAAAATTAAATGTGAAGACGAAGATTTAATAT10.78125No Hit
ATTCTTGGCAAATGCTTTCGCTCTGGTCCGTCTTGCGCCGGTCCAAGAAT10.78125No Hit
GGGCAACCTCCTCTTCTGGTTTAGGAACAATCTGTTCCTTTTCCGTAAGG10.78125No Hit
CAGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTC10.78125No Hit
AAGCTTCAGTGTCCTTATAAAAAATGAGGAAACAATACTGGTCCCGTGAC10.78125No Hit
TCTTCAGCCTGCACTGAAGTTCAATGGTGGTGGTCATATCAATCATAGCA10.78125No Hit
CCATTGCACTCCAGCCTGGGCAACAAGAGAGAAACTCCGTCTAAAAAAAA10.78125No Hit
TTCTTGGCAAATGCTTTCGCTCTGGTCCGTCTTGCGCCGGTCCAAGAATT10.78125No Hit
GTATCAACGCAGAGTACATGGGCAGTACTAGGCATCGTCATCCAATGCGA10.78125No Hit
GAAAACTACACTGTAGTTAAAAATTAAAAAAAAAAAAGACAAGATTTAAT10.78125No Hit
GTTATTCACTTCCTACATGCTTTCTCGCCAGAAAACATGGTTGATTTTAT10.78125No Hit
CATCTAAGGGCATCACAGACCTGTTAATGCTCAATCTCGGGTGGCTGAAC10.78125No Hit
CTCATTCTCAGAGGAGAGAAGTGACGTGTGCCTGGTGCAGCTGCTGGGAA10.78125No Hit
GCAATGGATTTCTTCAAGTTATCAAAGATCAGACGACCTTCCTCTACTCC10.78125No Hit
GTACATGGGAAGCAGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAA10.78125Clontech Universal Primer Mix Long (95% over 21bp)
CCTAAGGCGAGCTCAGGGAGGACAGAAACCTCCCGTGGAGCAGAAGGGCA10.78125No Hit
AAATAAAGGGTATTCAAATGGAAAGAGAGAAAGTAAAACTATCTTTGTTT10.78125No Hit
GATGCGCGCCATGTCTCTGACCCTCAAGACGGCGCTGGTCGCCATTGTTG10.78125No Hit
ATCCCTGTGGTAACTGGCTTGTGGCGGCCAAGCGTTCATAGCGACGTCGC10.78125No Hit

[FAIL]Adapter Content

Adapter graph