FastQCFastQC Report
Wed 31 Aug 2022
EGAF00003636584

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003636584
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20
Sequences flagged as poor quality0
Sequence length100
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGGAGGGGCCATCTGGAAACTTGTGGACAGAGAAGAAGACCACGACTGG210.0No Hit
TTCTATATTCTGTATCCACGAGATCAAGTTTGTTAGCTCACACATGTGAG210.0No Hit
ATCTTCCTGTCCCTAGACTTCACGGAGTAGGCGAATGCTATGAAGCCCAG15.0No Hit
ACCACCAACTGCTTAGCACCCCTGGCCAAGGTCATCCATGACAACTTTGG15.0No Hit
GAATAATTGCAATCCCCGATCCCCATCACGAATGGGGTTCAACGGGTTAC15.0No Hit
AGCCCACCGTGCTCGGCTAATTTTTGTATATTTAGTAGAGACGGGGTTTC15.0No Hit
GTATCAACGCAGAGTACATGGGACCCAGAGGTGAATGCAAAGTAAAAAGA15.0No Hit
GATGAGAGAATCCAATTCTTCATCTCCACGAATAGCAAGTTGCAAGTGAC15.0No Hit
ATAGTCTAAACTTTAAAAATTATGCTTTCATAAAATTAACATCCACATTG15.0No Hit
CCCTCTACCCTCAGCCTCAGTTCTCCAAGAGATTCCCACCCACCTGATTT15.0No Hit
GGAGAAATATGTTGGCTGTACTGGTTTAAGTTATTGCATAAAAGTTGAAT15.0No Hit
GGGCGTTGAGTCCGTCCGACTTCACTGCCCCCTTTCAGCCTTTTGGGTCC15.0No Hit
GTGCATTTCCTCATTTCTTTCATTTGGAAAGTGGTGAGAAGGTCCTCTAA15.0No Hit
GGCTTTACAAGCGATGAGAGACTCATCAGAGCCCTGGGCACTGTTGCTGG15.0No Hit
CCTCAATTTAGCCAAGCCAGACTTTGGAGCCGAAGCCAAATTAGAAGTAT15.0No Hit
AAAAAGGGCTGGACACAGTGGCTCATGCCTGTAATCCCAGCACTTTGGGA15.0No Hit
GCATGAGAGAGCCCAGAGGGAGGAAGAAGCCAGACGACAGTCAGGAGCTC15.0No Hit
TAGCAGAGCTGTATTGAGGGTTAACGGTGGTAATGGGTCTCCAGGGCTTG15.0No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)